Parus major (Great Tit): 107211023
Help
Entry
107211023 CDS
T04864
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107211023 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaj03019
]
107211023 (PARN)
Enzymes [BR:
pmaj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107211023 (PARN)
Messenger RNA biogenesis [BR:
pmaj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107211023 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
107211023
NCBI-ProteinID:
XP_015497933
Ensembl:
ENSPMJG00000010397
LinkDB
All DBs
Position
14:6401973..6448559
Genome browser
AA seq
638 aa
AA seq
DB search
MEVIRSNFKDNLNKVYEAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDDTEEKYIMKSFNFYIFPKPFNRNSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNSTKCPVTIPEDQKKF
VDKVVEQIEDLLKNEESESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIV
ISKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYNTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLK
TQCTPYVSQSRYYCVNSFTGTSTVGKRSMSPIEEETGSDDMEEGEGQDPENDQTDSCAES
LPDGKKRAKKLKKIKTEQVPAGSLTTSSTGIFEVPETW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatcaggagcaattttaaggataaccttaacaaagtgtatgaagccattgaa
gagtcggacttcctggccatcgatggagagttttcagggatcagtgatgggccttcagtt
agtgcattaacaaatggctttgacactccagaagaaaggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgatgacacagaa
gaaaagtatataatgaagtcatttaacttctatatttttccaaaaccctttaacagaaat
tcaccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaacggaattccttatttaaatcaggaagaagaaaga
cagctaagggaacagtatgatgaaaaacgttctcaagccaatggtgcaggatctctgtca
tacatttctcctaattccacaaagtgccctgtaacaattcctgaagatcagaaaaaattt
gttgataaagtagtggaacagatagaagacttactaaagaatgaagaaagtgaaagtttg
gaactggagccatgtacaggatttcaaaggaaattaatttatcagaccttgagctggaag
tatccaaaaggtatccatgtggaaactctggagtcagataagaaggagagatacattgtt
attagtaaggtagatgaagaggaacgaaaaagaagagagcagcagaaacaagcaaaagaa
caggaagaattgaatgatgctgtaggattttccagagttgttcatgccattgctaattct
ggcaagcttgttattgggcacaacatgctgctggatgttatgcacaccatacatcagttc
tattgtcctctacctgatgacctaagtgagttcaaggaagtaacatcatgtgtctttccc
cggttactggatactaaattgatggcaagtacacaaccttttaaggagatcattaataat
acatcgcttgcagaactggaaaagcgtttaaaagaggttccattcagccctcctaaagtt
gaaagtgcagaaggatttccaagttacaatacagcgtctgaacaactccatgaagcagga
tatgatgcttatattactggactgtgcttcatttccatggctaatttcctaggttcattc
ctcagtcctccgaaaaaccatgtgtctgctagatcaaaactcattgaacctttttttaac
aagttatttcttatgagagtaatggacataccatatctcaatttggaaggaccagacttg
cagcccaaacgagatcatgttcttcatgttacttttcccaaagagtggaagactagtgac
ctataccagcttttcagtgcctttggtaacattcaggtttcgtggattgatgatacatca
gcatttgtatcattgagccagccagagcaagtacaaatagctgtaaacaccagccggtat
gctgaaagttataggatccagacatatgcagagtatgtggagaaaaaacatgaagaaaaa
caagccaagagaaaatgtacagaagatagctggaaggagatggagaggaagaggttaaaa
acccagtgcacaccctacgtttcccagagtcgatactactgtgttaacagttttacaggt
accagtacagtgggaaagagaagcatgagccctattgaggaagaaactggttctgatgat
atggaagagggagaaggccaagatccagaaaacgatcagacagactcctgtgcagagtct
cttccagatggtaagaagagagccaaaaagttgaaaaagatcaagacagaacaagttcca
gcaggaagcctcacaactagttccactggaatctttgaggtccctgaaacatggtag
DBGET
integrated database retrieval system
