Parus major (Great Tit): 107211580
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Entry
107211580 CDS
T04864
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03030
DNA replication
pmaj03410
Base excision repair
pmaj03420
Nucleotide excision repair
pmaj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107211580 (RFC5)
03410 Base excision repair
107211580 (RFC5)
03420 Nucleotide excision repair
107211580 (RFC5)
03430 Mismatch repair
107211580 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmaj03032
]
107211580 (RFC5)
03036 Chromosome and associated proteins [BR:
pmaj03036
]
107211580 (RFC5)
03400 DNA repair and recombination proteins [BR:
pmaj03400
]
107211580 (RFC5)
DNA replication proteins [BR:
pmaj03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
107211580 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
107211580 (RFC5)
Chromosome and associated proteins [BR:
pmaj03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
107211580 (RFC5)
DNA repair and recombination proteins [BR:
pmaj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
107211580 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
107211580 (RFC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_16
AAA_24
AAA_22
AAA_11
AAA_assoc_2
DEAD
AAA_14
ResIII
RuvB_N
DUF815
AAA_5
AAA_30
AAA_19
DNAX_ATPase_lid
PhoH
AAA_7
TniB
TIP49
ATPase_2
nSTAND3
Gp44_lid
AAA_25
Thioredoxin_6
AAA_28
Hydantoinase_B
Motif
Other DBs
NCBI-GeneID:
107211580
NCBI-ProteinID:
XP_015499232
Ensembl:
ENSPMJG00000018890
LinkDB
All DBs
Position
15:12084262..12086851
Genome browser
AA seq
357 aa
AA seq
DB search
MAPAGSANLPWVEKYRPQALSELVSHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTIL
ACARQLYREREFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQ
EEGVDVTEDGMKALVTLSSGDMRRALNILQSTSMAFGKVTEENVYTCTGHPLKSDIANIL
DWMLNQDFSSAYRKIMELKTLKGLALQDILTEIHLFVHRGGERILLQMILEKPNFPLPLT
ECFLLSTVDFPPSIRIQLLIKLADIEYRLAAGTSEKIQLSSLIAAFQVTRDLVAAEA
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atggcgccggcgggcagcgcgaacctgccgtgggtggagaagtaccggccgcaggcactg
tccgagctggtgtcccaccgggacatcctcagcaccgtgcagcgcttcatcagcgaggac
cggctcccccatctgctcctctatgggccgcccggcaccgggaagacatccaccatcctg
gcctgtgccaggcagctctaccgggagcgggagttcggctccatggtgctggagctcaat
gcctccgatgaccgaggcatcgacatcgtccgagggcccatcctgagctttgccagcacc
aggaccatctttaagaaaggcttcaagctcgtcatcctggatgaagccgatgccatgacc
caggatgctcagaacgccctgaggagagtgatcgagaaattcacagaaaacacccggttt
tgcctcatctgcaactacctctccaagatcattcccgccctgcaatcccgctgcacccgc
ttccgcttcggccccctgaccccggagctgatggtgccgcggctccagcacgtcatccag
gaggagggggtggatgtgactgaggacgggatgaaggctctggtgaccctctcgagcggg
gacatgcgcagggccctcaatattttgcagagcacctccatggcctttgggaaggtgaca
gaggaaaacgtttacacctgcacggggcatcccctcaagtctgacatcgccaacatcctc
gactggatgctgaaccaggatttttccagtgcctaccgcaaaatcatggagctgaagacg
ctgaagggcctggccctgcaggacatcctcactgagatccatctcttcgtgcacagaggt
ggggaaaggatcctgctccagatgatcctggagaagccaaacttccccctgcccctcacc
gagtgtttccttctctccacagtcgacttccccccctccatccgcatccagctgctgatc
aagctggcagacatcgagtaccgcttggctgctggcaccagcgagaagatccagctgagc
tccctcatcgccgccttccaggtcaccagggacctggtggcggctgaagcctga
DBGET
integrated database retrieval system
