Parus major (Great Tit): 107212021
Help
Entry
107212021 CDS
T04864
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188 homolog isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107212021 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaj03019
]
107212021 (NUP188)
Messenger RNA biogenesis [BR:
pmaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107212021 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
107212021
NCBI-ProteinID:
XP_015500250
Ensembl:
ENSPMJG00000007061
LinkDB
All DBs
Position
17:complement(5503533..5528057)
Genome browser
AA seq
1737 aa
AA seq
DB search
MAAGGLSARSSRELWTILLGRSALREPAQIAAELNKHWQRLLEGLSYYKPPSTTSAEKIK
ADKDVAAPLKELGLRVSKFLGLDEEQSVQLLQSYLQEDYRGTRDSLKTVLQDERQSQALM
LKLADYYYEERICILRCVLHLLTYFQDERHPYTAQYFQCVEKLDKELVPNYRKQFEALYK
AEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEVIFLYYAYFEMAPEELLAFAKMFKEQ
GFGTRQTNRHLVDESMDHLVDRIGYFSALILVEGMEIDSLHERALDDRTEEHKLANSQHI
HQEMDNQLLQLGDVSHHAPVLLAWALLRHTINPEESTNIIRRMGSTAIQLNVFQYLTKLL
RSLSSGGKNCTASTACMCIYGLLSFVLTSLELHTLGNQQDIIDAACEVLAASSIPQLFWK
TEPTAGLGIILDSVCGMFPHLLTPLLQLLQALVSDKSTAKKVYSFLDKMSFYIELYKHKP
PDVISHEDGTLWRRQAPKLLYPLGLGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTL
FTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDVSIADCLLPITSRIYMLLQRLT
TVISPPVDVIASCVNCLTVLAARMPAKVWTDLHHTGFLPFVANPLSSMNHMISAEGMNAG
GYGNLLMSMEQPQGEYSVTISFLNLVTTLVRGQLGNTQSQGLVPCIVFVLKEMLPNYHKW
RYNSHGVREKIGCLILQLIHAILNLCPEMDPRSSNAPSLQSLCIFSLANTEAGQAVINIM
GIGVDTIDMVMASQSSSDESQGQGQLLIQTVKLAFSVTNNVIRLKPPSSVVSPLEQALTQ
HGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDAFLT
HLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGEWSCLQVVL
ELIDSKQQERYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTNPLFGTLPP
LSESSELSVLDTCALIMKIICLEIYYVVKGSLDQSLKDTLQNFSTKKRFAYWSEYVKSLA
QHVAETEGTSCASITEYQMLISAWRMLLIISTSHADIMHLTDSAVHQQLFLDVLNGTKVL
LQVPMSVPCLQLGSMLCTLLLILLKQWKSELSSVDKIINSLTQILEGVLQADQQMMEKTK
AKVFSALITVLQMKEMKVNDIPQYPQLVLSVCETLQDEVIALFDQTRHSLTLGDAADDKD
SMETDDASRVKHKDQRDGVCVLGLHLAKELCEVDEDGDYWLQITRKVPVLPTIFAALEIS
LRVKQNLHFTEASLHLLLTLARTQQGAAAMAGAGVTQSVCLPLLSVYQLSTNGAIQTSAS
SRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERILQCLNAVRTVQSL
ACLEEADHTVGFILQLSNFTKEWHFHLPQLMRDMQVNLCYLCQACTSLLHSRKMLQHYLQ
TKNGDSLPSSVTPRVQRNPQASSKHPSPESEAAEQKALLTVQYSLLKILSKSLAALRHFT
PDVCQILLDQSLDLAEYNVLFVLSFTTPAFDSDVAPSFGTLLATVNVALNMLGEMDKKKE
PFPQAAGLNMQEGTKTLKSLLMFTMENCFYLLISQAVRYLRDPAVHPRDKQRMKQELSSE
LSTLLSSLSRYFRRGGPSSPASGVLPSPQGKSASKLGPEGQEPLFQLVQAFVRHVQR
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggcgggctgagcgcgaggagcagcagagaattatggacaattctgctgggt
agatcagctttaagagaaccagcccagattgctgcagaattgaacaagcactggcagagg
ctgttagagggactgtcatactacaaaccaccaagtacgacttcagcagaaaaaattaaa
gctgataaagatgtagctgctccactaaaagagttgggtctcagggtcagcaagttcttg
ggtctggatgaagagcagagtgtgcagttgttacagtcttatcttcaagaggattacaga
ggaacaagagactccctgaagacagttcttcaggatgaaaggcagagtcaggctctgatg
ttgaagctcgctgactactactatgaggagaggatctgcatcctgcgctgcgtcctccac
ctgctcacctatttccaggatgagagacacccttacacagcacagtacttccagtgtgtt
gaaaagttggacaaggagctcgttccgaattaccgcaaacagtttgaagcgctgtacaaa
gcagaagctcctacatgggaaacacatggaaatctcatgacagaacgtcaggtttcccgc
tggttcgtgcagtgccttcgggagcagtccatgctcctggaagtcatcttcctctactat
gcatactttgaaatggcacctgaggagctcctggcatttgcaaagatgtttaaagagcag
ggatttggcacgagacaaaccaacagacatttagtagatgagagcatggatcaccttgtg
gatcgtattgggtactttagtgctcttattctggtggaaggcatggaaattgactccctc
catgagcgtgctttggatgacaggacagaggagcacaagttggccaacagtcagcacatc
caccaggagatggacaatcagctgctgcagttaggggatgtctcacatcatgctccggtg
cttttggcctgggctctgctccggcacaccataaacccagaggagtccacaaacatcatc
aggaggatgggcagcactgctatccagctaaatgtcttccagtatctgacaaagctgctg
cgatccctcagcagtgggggcaagaattgtactgccagcacagcttgtatgtgtatttat
ggacttctttcctttgtcctgacatccctggaattacatacattgggcaatcagcaggat
ataattgatgctgcatgtgaagttctggcagcttccagcattcctcagctcttctggaag
acggaacctactgcaggtctgggtattatcctggacagtgtttgtggcatgttcccccat
cttctcactcctctccttcagctgctccaagcccttgtgtctgataaatctactgcaaaa
aaggtatacagtttcctggataaaatgtccttctatattgagctgtacaagcacaaacct
ccagatgtgatctcccatgaggatggcacactgtggagaagacaggctccaaagctcctc
tatcctcttggactaggtcagacaaatctacggatccctcagggaacagtgggccaagtg
atgctggatgatcgagcttatttggtacggtgggagtattcctacagcagctggactctg
ttcacctgtgagattgagatgctcctccatgttgtgtcaacagcagatgtaattcagcat
tgccagcgggtcaagcccataattgatctggttcataaagtgatcagcactgatgtatca
atagcagattgtcttctcccaatcacatcacgaatctacatgctcctgcagaggctaaca
actgtaatctctccccctgtggatgttattgcttcttgtgtcaattgcttgacagtcctg
gctgctcggatgccagccaaggtttggactgaccttcaccacacggggttcttgcctttt
gttgccaatccgctgtccagtatgaatcatatgattagtgcagagggaatgaatgctggg
ggctatggaaacttactgatgagcatggaacagccccaaggcgagtacagtgttaccatc
tccttcctgaacctggtaacaactcttgtccggggacaacttggtaacacacagagccaa
ggcctggtgccctgcattgtgtttgttctgaaggaaatgttaccaaactaccacaaatgg
agatacaactctcatggagtgagagagaaaatcgggtgcctaattctgcagttgatccat
gctatactgaacttatgccctgaaatggatcctcgcagcagcaatgcccccagcctgcag
tccttgtgcattttcagcctggccaacacggaggcagggcaagctgtcattaacatcatg
ggaattggggtggacaccattgacatggtaatggcctctcagtccagcagtgatgagtcc
caaggccaaggccagctgctgatccagacagttaagctggccttctccgttaccaacaac
gtcatccggctgaagcccccgtccagcgtggtgtctcccctggagcaggcactcactcag
catggtgctcatggaaacaaccttattgctgtcttggccaaatacatctaccacaagcat
gaccctgcacttccacgcctggccatccagctgctcaaacgactggctacagttgctccc
atgtctgtgtacgcctgcctgggcagtgacgctgctgccatccgcgacgccttcctcacc
cacctgcagagcaagatcgaggacatgcgcatcaaggtcatgatcctggagttcctcaca
gttgcagtggagacacaacctgggcttattgagctcttcctgaacttggaagtaaaggat
ggcagtgatgggtcaaaggaattcagcttgggagagtggagttgcctccaagtggtgtta
gagctgattgactccaaacagcaggagaggtactggtgccctcccctcctgcaccgcgcc
gccatcgccttcctgcacgcgctgtggcaggaccgtcgtgacagcgccatgctcgtgctg
aggacaaagccaaagttttgggaaaatttaactaatcccctctttgggacacttcctccg
ctttccgaatcatcagagctcagtgtcttggatacctgtgccttaataatgaaaatcatc
tgtttggagatctactatgttgtcaagggctctctggatcagtccctgaaggacacactg
cagaatttctccaccaaaaagcgctttgcctactggtcagagtacgtgaagtccctggca
cagcacgtggcagagaccgagggcaccagctgtgcctccatcaccgagtatcaaatgctc
atctcagcctggcggatgctgctcatcatctccacaagccatgctgatatcatgcatctg
actgattctgcagttcatcagcaattgtttctggatgtgctaaatggcaccaaggttttg
cttcaagttcccatgtcagtgccctgtctgcagctggggtctatgctgtgtacccttctt
ctgatcctcctcaagcagtggaaaagcgagttgagttctgtggataaaatcataaactcc
ttgacgcagattctggagggagtactgcaggcagatcagcagatgatggagaaaaccaaa
gccaaagtgttctcagctcttatcactgttctgcaaatgaaggagatgaaagtgaatgac
atcccccagtacccacagctggtgctgagtgtgtgtgagactctccaggatgaggtcatt
gcgcttttcgaccagactcggcacagcctgaccttgggagatgctgcagatgacaaggac
agcatggagactgatgatgcctcccgagtaaagcacaaggaccagcgagatggggtgtgt
gtgctgggtctgcatctggctaaggagctctgtgaagtggatgaagatggagactactgg
ctgcagattactaggaaagtccccgtgcttcctaccatctttgctgcactggagatcagc
ctgagagttaaacaaaaccttcacttcacagaagcctccttacacttgctgctgacctta
gcaaggactcagcagggagcagcagcaatggctggagctggtgtcacccagagtgtctgc
ctgcccctcctgagcgtgtaccagctcagcacaaatggagccattcagacatctgcttca
tcccgcaagtccctggatgccccctcctggcccggggtctatcgcctgtccatgtccctg
atggaacgtcttctcaaaacactgagatacaacttcctgactgaagcactggactttgtg
ggtgtccatcaagagaggatccttcagtgcctgaatgcagtacggaccgtgcagagcttg
gcctgtctggaagaggctgatcacactgttggcttcattcttcagctctcaaatttcaca
aaggagtggcatttccacctgccacagcttatgagggacatgcaggtgaatctgtgttac
ctgtgccaggcctgtacctccctcctgcacagtcgtaaaatgctccagcactacctgcag
acaaaaaatggtgattcccttccatccagtgtgactccccgagtgcagcgtaatcctcag
gcctcctccaaacaccccagccccgagtcagaggcagcagagcagaaggctctgctcaca
gtgcagtacagcctcctcaaaatcctcagcaagtctctcgctgccctgcgccatttcacc
cctgatgtctgtcagatcctcctggaccagtcactggaccttgctgagtacaatgtgctc
tttgtcttgagcttcaccacaccagcctttgattcagatgttgcaccttcctttgggacc
ctccttgccacagtcaatgtggctctgaacatgctgggagagatggataagaagaaagaa
ccttttcctcaggctgcagggctgaatatgcaagagggaaccaaaaccctcaagtctctg
ctcatgtttacaatggaaaactgtttctacctgctcatctcccaggctgttcggtacctg
cgggaccccgccgtgcacccccgggacaagcagcggatgaagcaggagctcagctcggag
ctgagtacactgctctccagcctgtcccgttacttccgccggggcggtccctcttcacct
gccagcggggtccttccctctccccaaggaaagtctgcctccaagctgggtccagagggg
caggagcccttgtttcagctcgtgcaggcctttgtccggcacgtgcagagatag
DBGET
integrated database retrieval system
