Parus major (Great Tit): 107212042
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Entry
107212042 CDS
T04864
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmaj03000
]
107212042 (RC3H2)
04121 Ubiquitin system [BR:
pmaj04121
]
107212042 (RC3H2)
Transcription factors [BR:
pmaj03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
107212042 (RC3H2)
Ubiquitin system [BR:
pmaj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107212042 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf-C3HC4_3
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
zf-C3HC4_2
Xin
Motif
Other DBs
NCBI-GeneID:
107212042
NCBI-ProteinID:
XP_015500299
Ensembl:
ENSPMJG00000000346
LinkDB
All DBs
Position
17:1648166..1674290
Genome browser
AA seq
1205 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQTVKLSNVGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAASPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKISATVRTFPLLNKVGVNSTVSTTTGNVISVI
GSPEATGKMVPSTNGIANLETGVPQLIPRCADTSLRALENTKKGGKTGANGQNASGSPTE
SLPENKIGSPPKTPVSQAAATSAGPPNIGTEVNSVPPKSSPFVPRVPVYPPHSDNVQYFQ
DPRTQLSYEVPQYPQTGYYPAPPTVPAGVAPCVPRFVRSNNVPESSLPPASVPYADHYST
FPPRDRLNSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPQMYPRDDIIRSNSLPPMD
VMHSSVYQPSLRERYNSLDGYYSVACQPPNEQRTVPLPREPCGHLKTGYDEQLRRKPEQW
AQYHTQKTPLVSSTLPMATPSPTPPSPLFSVDFSTEVGSQRTSLFSLPASFSESVSDLSG
TKFEEDHLSHYSPWSCGTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFETQR
RAKEEDPIIPFSDGPIISKWGAISRSSRTGYHTTDPIQATASQGSATKPISVSDYVPYVN
AVDSRWSAYGSDSASSARYAERDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQRE
ANALAMQQKWNSLDEGSRLTLNLLSKEIDLRNGETDYPEDCADTKPDRDIELELSALDTD
EPDGQGEQIEEILDIQLGISSQEDQLLNGTTVENGHLLKQHQKESMEQKRQSLGEDLVIL
EEQKTILPVTSCFSQPITTSVSNASCLPISTSVSVGSLILKTAHIMSEDKNDFLKPVANG
RMVNS
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaggcagctcagtggacagaatttctgtcctgcccaatctgctacaatgaa
tttgatgagaatgtgcacaaacccatcagcttaggttgctctcacaccgtgtgcaagacc
tgcctgaacaagctccatcgcaaggcatgtccttttgaccagactgccatcaacacagac
atcgatgtgcttcctgtgaactttgcactcctccagctggttggagcccaggtacctgat
catcagacagtaaagttgagtaatgtaggagagaacaaacattatgaagtagcaaagaaa
tgtgttgaggatttggcactctacttaaagccattaagtggaggaaaaggtgttgcaagc
ttgaatcagagtgcactgagccgtcccatgcagaggaagcttgtgacactggtgaattgt
cagctggtggaggaggagggtcgggtcagagccatgagggcagctcggtcgctgggagag
agaactgtcacagaactcatcctgcagcaccaaaatcctcagcagctttctgccaatctc
tgggctgctgtcagggcacgagggtgccagtttctaggaccagctatgcaagaggaggca
ctgaaacttgtattactggcactggaagatggctctgcactctcaagaaaagttctggta
ctttttgttgtgcaaaggctggaaccaagatttcctcaggcctctaaaacaagcattggt
catgttgtgcagctactgtatagagcatcatgctttaaggtcactaaaagagatgaagat
tcttctctgatgcaacttaaagaagagttccggagttacgaggctttgcggagagagcat
gatgcccaaattgttcacattgccatggaagcaggacttagaatatcaccagaacagtgg
tcttctcttctttatggagacctggcacataaatcacacatgcaatccattattgacaag
cttcaatctccagaatcttttgctaagagtgtacaagaattgacaattgtcttgcagcgc
acaggggatcctgcaaacttaaacaggctgaggcctcatttagagctcctggcaaacata
gatccaaatccagatgcagcatctccaacatgggagcagctggaaaatgcaatggtcgct
gtaaagactgtggtccatgggctggtggatttcattcagaattacagtagaaaaggccat
gaaactccacagccacaaccaaatagcaaatacaaaacaagtatgtgccgtgaccttcga
cagcaaggggggtgtccaagaggaacaaattgtacatttgctcattctcaggaagagctt
gaaaaatatcgcttgaggaacaaaaaaatcagcgcaacagtgagaacattcccccttctg
aataaagttggcgtaaacagcaccgtctcaaccacaacaggaaacgtgatctctgtcata
ggaagccccgaggcaacaggcaagatggtgccaagtactaatggaatagcaaatctagaa
actggggttccccagctgatcccccgctgtgcagacacctccctgagagctctggagaac
accaagaagggagggaagactggagccaatggccagaacgcttctggctcccctacagaa
tcacttcctgaaaataaaattggttctccacccaagactcctgtaagccaggcagcagct
acctcagctggtcctcctaatattggaacagaagttaattctgtgcctccaaaatccagc
ccgtttgttcccagagtacctgtctaccctccacattctgataatgttcaatatttccaa
gatcccaggactcagctgtcatatgaagttccacagtacccacagacagggtattatcca
gcacctccaacagtaccagctggtgtggctccctgtgttcctcgctttgtgaggtccaat
aacgttccagaatcctccctcccacctgcttccgtgccatatgccgatcattacagtaca
tttccccctcgagatcgactgaattctccctaccagcctcctcctccgcagccgtatgga
ccagtccctcctgtcccctctggaatgtacgctccagtttatgacagcaggcgcatctgg
cgcccacagatgtacccacgagatgatattattaggagcaattctttacctcccatggat
gtgatgcactcatctgtctatcagccatcattacgggagaggtacaactctctggatggg
tattactctgtggcttgtcaacctccaaacgagcagaggactgtgcctttaccaagggag
ccttgtggtcatttgaagactggttatgatgagcagctgagacggaagccagagcaatgg
gcacagtaccacacacagaaaacacccctggtatcgtcaacccttcctatggcaacacca
tctccaacgccaccttctcctctcttcagtgtagatttcagcacagaggtgggaagccag
agaacctctttattttcccttcctgcttctttctcagagagtgtcagtgatttgagtgga
actaaatttgaggaagaccatctctctcactattcaccgtggtcttgtggcactattggc
tcttgtataaatgctatcgactcagagcccaaggatgtgattgccaattccaatgccgtg
ttaatggatttggacagtggggatgttaaaaggagagtgcatttatttgaaacgcagaga
agggcaaaggaagaagatcctataatcccgtttagtgatggacccatcatctccaagtgg
ggtgcaatctccaggtcatcccgcacaggttatcacacaacagatccaatccaggccact
gcttcccaaggaagtgctactaagcccatcagtgtatcagattatgtcccttatgtcaat
gctgtagactcaagatggagtgcctatggctcagattctgcctcctcagcacgttatgca
gaacgggacaggtttatagtcacagatttgtctggtcacagaaagcattccagcactgga
gatctactgagtattgaattacagcaggccaaaagcaactccttacttcttcagagagag
gcaaatgcactcgccatgcagcagaagtggaattctctagatgaaggcagtcgtcttacc
ttaaaccttttaagcaaggaaattgatttgaggaatggtgagactgattatcctgaagac
tgtgcagacacaaagccagaccgagacattgaattggagctgtcagccctcgatacagac
gaacctgatgggcaaggtgaacagatagaagagattctggacatacagctagggattagc
tcccaagaggatcagctgctcaatggaacaactgtagagaatgggcatctgctaaaacag
caccagaaagaatctatggaacagaagagacaaagtttaggtgaagaccttgtgattctg
gaggagcagaaaacaatcctgcccgtaacttcttgcttcagtcagccgatcacaacatct
gttagcaatgcaagctgcctgcccatcagcacatcagtcagtgttggcagcctcattttg
aaaactgctcacattatgtctgaggataaaaatgactttttaaagcctgttgcaaatggc
aggatggttaacagctga
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integrated database retrieval system
