Parus major (Great Tit): 107212059 Help Entry 107212059         CDS       T04864                                  Symbol SETX Name (RefSeq) probable helicase senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism pmaj  Parus major (Great Tit) Brite KEGG Orthology (KO) [BR:pmaj00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:pmaj03021]     107212059 (SETX) Enzymes [BR:pmaj01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      107212059 (SETX)     5.6.2.5  RNA 5'-3' helicase      107212059 (SETX) Transcription machinery [BR:pmaj03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      107212059 (SETX) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_11 AAA_12 SEN1_N AAA_19 AAA_30 UvrD-helicase Viral_helicase1 AAA_22 SLFN-g3_helicase AAA_16 ResIII nSTAND3 Motif Other DBs NCBI-GeneID:  107212059 NCBI-ProteinID:  XP_015500342 Ensembl:  ENSPMJG00000006725 LinkDB All DBs Position 17:4233280..4259920 Genome browser AA seq 2738 aa AA seqDB search MSTCRWCTQSGADTTEFLKHYAAHRLSQEDFEGSNDDLSYCLECVVEYHKAREECPRLHE DLWDLETSRLIAHMEKSMNEETGEDDELFLIDEHGETRLSGYVGPNFENNLRVPLLEILK YPYLLLHKKVSELCVEVLCRMELSHDSFQVFEKYPGIYLFLVHPHEVIRRWAILTARNLG KVDRDDYYDLEEVLTCLFKVIELGLFENPDIYSSSMFEKGKLILLPAHLYDTANYKNYWL GICMLLSVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQ LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFRRTKSEPESDYGDDMISCSQIVYN YNTEKPQKDTGWRAAICPEYCPNMYEDMQTLANMLQSDIGRDMRVHHSTFLWFIPFVQSL MDLKDLGVAYIVEVIHYLCSEIKDILIERIQQCDKISEFFLLILVSIVELHRRKKCLHLL WISSQEWVEAVVRCTTLPSRAFTRCSEKALGLCAKGSGAGSFQAPSSVQHACVQLIRSLL KEGYQIGQHALCKQYLDKLNLLLRGNRAVGWQLSSQETQELQMCLKQVIRSIKGKALSTS LVGGSSSNSTALPTGSIKHERNACDDGYKTSGHDREDLYSSFVTSKEGRDCPENPFHRRK NAWEEECRDAGRSSTSCTSTEGLLMNIKKEHDDLTAQEFVFPQNSSATKVCGKVQENRSY DLVPGKCNTDDQFFNSNTHPSDFRRGREFEMKHKAELKTPPYLCAQTHLDCPSSRNCKSL QETSANSEFQSRLVPTKQASKEASLDSSNSSRNKPGVQGKEDDSTLLVGRNDTSLNKVST EEKSGSSLLSSFKRNTNVQTSNQEQPNLNDLDKYDCKNQFLETSCRDKIPTYGYFPLSSE NKRNMIRPLSVKCESSDRLFEFSEYFKRENSSMGKKEEDFVKTVSKDDTLSDAQVDRELS KLSLAAYAKSVNFPVESNQESSVYHNVSEIKRKVKGSVRSSNEGQSTRCPSGADGPNNQV IVISDSSDEEKSMAEKEEIKTKNENVCAEPSSTSSNVSDSDIKRESKSPGSPMLLDDCDS QYFEFETEAEVFSAWQDTQAYAVETTQEYKQDHVSPAAETSNSDDCLNNDLNDWGYDLYY FSDDTMEEATSSIEKQTEDTSHQKEAGGTKEVTNSTLEESVGKEDAKGQLEKGADKGVAK GFTPDSKLPEPTASTSPISLASKLALKKNSTSPQKPTAKCKSAPAVQRSPKKPPVVKTAK NKPLQSMTERSQPGRSLPAVVPPRKVRQSPAPSSTVEKLGLKKGPRKAFDLSQPSLESLA QLRSHGKAAGRIGVAQKKRTKQIEAQRLSVKRNKKLLICQDQKYPRQTRSKRSVKNPAGS SESRNKVIKVCVKPVEQKPQGFELAAIKESVQNQREKKREETACPSTSEGKFESLSVEDM ASASKMPHSSDWNRKWEGNSVVVPPVPMDSSLSSTALGDDKDESSGKGCTVLPGGEMKTS RQNGCKSDESSDEGDDNLFLTQLDPVDMELCSQEESVQDAAIGSKTPEEMDVEESLQQSE PSAVVKCKDKDCMEQVEKPGEYCSKHPATDPGADHVFAKPSLPPPKTRKPSTIKIFSSSS SSRNAAFSKDLEDVRKLPPPSKNKVNASKPVVVRPPLYPKPAPAGNPTCRSPSFSNVPQP LGSSNVLQSQNRQYDNALNIYREHGQETYSSFLGAQQRDYSIFVNQVLKWTYEMFANFSL FGTPNNLLQSIVASVPVQFQGYNEYFNTFFPLMMLNAFETLAQEWVENQKAREKGYCFYL QNFSADMNTAHFTAHLRESDLARQLHPKEDDLILLVVHKEKDTFGEESGMDSHIVNHVGL VTRFSRASGYANRQKEQQTACHLTVQTRGNLSFFIHKQVKCVVVGSLVTTHRKFKGLLLL SRSPLAKPIINPSYNDFCPRDLPVASGSAASHMNEYNEDQKRAIETAYAMVKQHPGLPKI CLIHGPPGTGKSKTIVGLLSRVLRENTRNEKTARKKNSKIKPNRFLVCAPSNAAVDELMK KIIIAFKEKCQNKQEPLGNCGDIKLVRLGAEKSINNEVRGFSLDKQVEHRMKRKPGDCDQ DIQKKKEALDQKLDMLSRERAMHKCEKRESQMLNDEIGRLAKERQQLASQLKEVRGHSQK VQADIILESDIICCTLSTSGGSLLESAFSRQGLDPFSCVIVDEAGQSCEVETLIPLIHRC NKLVLVGDPKQLPPTVKSVKAQQYGYDQSLMARLQRHLEEQVQRNVLCSLPVVQLTVQYR MHPDICLFPSNYVYGRTLKTAKAIEENRCSSEWPFQPYLIFDVADGREERDNESYSNPRE VKLVMELIKTIKEKRKDLGLRRIGIITPYSAQKRKIQEQLDSVFKNNSPGEVDTVDAFQG REKDCIIVSCVRANSSEGSTLAYVQANSTKGSIGFLASLQRLNVTITRARFSLFILGRLQ TLMEDKNWNHLIQDAQKRGAIIRTTEKNYKKEALRILKLRPPGQPPAKGGTMTSPVLQAG SSSGKRSEPGNSGNSPQELAAGPGHAVPQGSRGPTQPAVAAAADSRRGSAPASGAAPAAD SRRGSAPASMGAAALAAIPEKPRDPRLASLASRTEAKGTEQPSRDGHRSAQSNPGSTPQQ GLDVSSAARDHICRTENAKKAQQTAGQCSLLPTAPHTAQHECDWRAAVSKSGSKAPSEGG QSRSHEWNKDSRGLPRRPSQESPENTESSSAKRRKIFP NT seq 8217 nt NT seq  +upstreamnt  +downstreamnt atgagcacatgccgatggtgcacacagagtggtgctgacaccaccgagttcctgaagcac tatgctgctcacaggctttcccaggaagattttgaaggatccaatgatgacctctcttac tgcctggagtgtgtggttgaatatcacaaagcaagggaagaatgtccaagactgcatgag gacttgtgggacttggaaacttctcgcctcattgcccacatggagaaatccatgaatgaa gaaacaggagaagatgatgagttgtttctgattgatgagcatggggagacacgtctgtct ggttatgtgggcccaaattttgagaacaacctgcgagtgcccctgctggaaatactgaaa tacccatatctgctgctgcacaagaaagtcagtgagctgtgtgtagaagtgctctgtaga atggaactaagtcacgactcctttcaggtctttgagaaatacccgggaatttatctcttt ttggtacacccacatgaggtgattcgtcggtgggccatcctaacagcaaggaatttagga aaggttgacagggatgattactacgacctagaggaagtgttgacttgtttgttcaaagtt attgagttggggctttttgagaatccagatatttacagctcttcaatgtttgaaaagggt aaactcatccttctgccagctcatttgtatgatacagccaactacaaaaactattggctg ggaatttgcatgttgctgtcagtgctggaagaacaagctatggactctttattactgggc ccagacaaacaaaatgattttatgcagtctatacttcacactatggagaaagaagcagct gatgattccactgacccgttttggcctgccctgcactgtttcatggttattttggatcag ctcgggtctaaagtttggggtcagctgattgatcctgtccaagcctttcaaaccataatc aacagtgtgagctacaacaatgaaatcaagaatattcgcagtagctttaggaggacaaaa tctgaaccagagtcagactacggtgatgacatgatttcttgcagtcagattgtttataat tataacacagaaaagcctcaaaaggacactggctggagggctgccatttgcccagagtac tgccccaacatgtatgaagatatgcagaccctggctaacatgcttcagtctgacattggc agagacatgcgtgtccatcacagcacattcctctggttcatcccttttgttcagtccctt atggatctcaaggacttgggtgtagcctatatagtagaggtcatccactacctctgctca gaaatcaaagatatcctcatcgaaagaatccagcagtgcgacaaaatctccgagttcttt ctcctcatcttggtgtccattgttgagctgcacagaaggaagaagtgcctgcatttgctg tggatcagctcccaggagtgggtggaggcggtggtgaggtgtaccacgctcccaagcaga gcgttcactcggtgcagcgagaaggcgctggggctgtgtgcgaagggctcgggtgcaggg tctttccaggcccccagctcggtgcagcatgcctgtgtgcagctcatccgcagcctgctc aaggagggctaccagatcggccagcatgccctgtgcaagcagtacctggacaaactcaac ctcctcctgcggggaaatcgagctgtggggtggcagctgagcagccaggaaacccaggag ctgcaaatgtgtttaaaacaagttataagaagtataaaaggcaaagcactgagcacctct ttggttggaggaagcagttcaaactcaacagctttgccaactggctctataaagcacgag aggaatgcgtgtgatgatggatacaagacaagtggacatgacagggaggacctttattcc tcatttgtcacgtcaaaggaaggcagagattgtccagagaaccctttccataggagaaag aatgcctgggaagaggaatgtagagatgcaggtagaagttcaacatcttgcacatccaca gaaggcctcttgatgaatattaaaaaggaacatgatgatttgacagctcaggaatttgtc ttccctcagaactcttcagcaacaaaagtatgtgggaaagttcaggaaaataggagctat gatcttgtgccggggaaatgcaatacagatgatcaattcttcaattcaaacactcatcct tcagatttcaggagaggcagagagtttgaaatgaaacacaaagcagaactcaaaacacca ccgtatctgtgtgcacaaactcatcttgattgcccctcttcaaggaattgtaaaagtttg caagagacaagtgctaacagtgagttccagtccagactggtccccactaaacaggcatcc aaggaagcatccctagattcctctaattcctctagaaataaacctggtgtgcaggggaag gaagatgacagtactttgcttgtagggcgtaatgacacctcactgaataaagtatcaaca gaagaaaagtcaggttcatcgttgctgtcttcctttaagagaaacactaatgtgcaaact tcaaaccaggagcagcctaatttaaatgatttggataaatatgattgcaaaaatcaattt ttggagacctcttgtagggataaaatcccaacatatggttattttccattgagctctgaa aacaagaggaatatgatcaggccactgtcagtgaagtgtgaatcaagtgacaggttgttt gagttttcagaatatttcaagagggaaaacagttccatggggaagaaagaggaggatttt gtgaagacagtttccaaagatgacactttatcagacgcccaggttgatagagaactcagt aaattatctttagctgcttatgccaaaagtgtcaattttcctgttgaatccaaccaggaa agctcagtgtaccacaatgtgtctgagattaaaaggaaagtgaaaggttctgtaagatct tccaatgaaggccaaagtaccaggtgtcccagtggtgcagatggccctaacaatcaagtc attgtcatttcggactcttctgatgaagaaaaaagcatggctgagaaggaggaaataaaa accaagaatgaaaatgtatgtgcagagccatcttcaacttccagcaacgtttctgatagt gacattaagagagaatccaagtctccaggctctcccatgttactggatgactgcgattct cagtactttgaatttgaaacagaagctgaggttttttcggcttggcaagatactcaagcg tatgctgtggaaacaactcaggagtataaacaagatcatgtttcaccagcagctgagaca agtaattcagatgactgcctgaacaatgacttaaatgactggggctatgatctgtattac tttagtgatgacaccatggaagaagcaacaagctcaatagaaaagcagacagaagatact tctcatcagaaagaagctggtggtacaaaagaagtgactaattcaactttggaagaatca gttggaaaggaagatgcaaaaggtcaactggagaaaggtgcagacaaaggtgttgctaaa ggcttcactccagactcaaaattgcctgaacccacagcttctacatctcccatctcatta gcttcaaagttggcccttaagaaaaatagcacaagcccgcagaagcccacagcaaaatgt aaatcggcaccggctgttcagagaagtcctaaaaaacctcccgttgttaaaacagccaaa aataaaccactccaaagcatgacagaacgttctcagcctggcaggtcactgcctgctgtg gttcctccaaggaaggttcggcagagtcctgctccatcatcgactgtggaaaagcttggc ctgaagaagggcccccgcaaggcattcgacttgtcccagccctccctggagagcctggct cagttgcgcagccacggcaaagctgcaggcaggattggagttgcacagaagaagaggacc aaacagatcgaggctcagcgtttgtctgtaaaacgtaataaaaaactgctcatctgccaa gaccagaagtatccaaggcagacaaggtccaaaagaagtgtgaaaaatcctgcgggaagt tcggagagcagaaacaaagttatcaaagtgtgtgtgaaacctgtggaacaaaagcctcaa ggttttgaactggcagctattaaagaatctgttcaaaaccaaagggagaaaaaaagagaa gagactgcttgtccttccaccagcgagggaaaatttgagagcctctctgtggaggatatg gcaagtgcctctaaaatgcctcattcttcagactggaacagaaaatgggagggtaacagt gtggtggttcctcctgtccctatggattcaagtctctcttccactgcacttggagatgat aaagatgagtcttcaggaaaaggttgcactgtcctgcctgggggtgagatgaaaacatcg aggcaaaatgggtgtaaatcagatgaaagcagtgatgaaggagatgataatctgttttta acccagttagatcctgtggacatggagttatgttctcaggaggaaagtgttcaagatgct gctataggtagtaagactccagaggaaatggatgttgaggaaagccttcagcagagtgaa ccctcagctgttgtgaaatgtaaggacaaagactgtatggaacaggtggaaaagcctgga gaatactgcagtaaacacccagccactgacccaggggcagatcatgtgtttgccaagcct tctctcccaccacctaaaacaaggaagccttccactatcaaaattttcagctcatcaagt tcttcacggaatgcagccttcagcaaagatcttgaagatgtcagaaagttgcccccacct tcaaaaaacaaagtgaacgcgtccaaaccagtggtggtcaggccaccactgtatccaaaa ccagcaccagcaggaaatccaacatgcagatctccaagtttcagtaatgtacctcaaccc cttggttccagtaatgttctccagtcacaaaatagacagtatgacaatgctttaaatatt tacagagagcatggccaagaaacctactcctcttttcttggtgctcagcagcgtgattac agcatttttgttaaccaagtcttaaagtggacttatgaaatgtttgcaaacttcagcctc tttggaactccgaataatcttctgcagtccatagtagcctctgttcctgtccaatttcaa ggctacaatgagtactttaatacattttttcctttgatgatgctcaacgcttttgaaaca ctggcacaagaatgggtggaaaatcaaaaagcgagagagaaaggttactgcttctactta cagaacttttctgctgacatgaatacagcacattttacagctcatctacgagagagtgat ttggcaaggcagcttcatccgaaggaggatgacttaatccttttggtggtccacaaagag aaggacacttttggggaagaaagtgggatggacagccacatagtgaatcatgttggcctt gtgacacgattttctcgtgcatctggctacgcaaatagacaaaaagagcagcaaactgcc tgtcatcttactgtgcaaacccgaggcaatttgtcattcttcatccataagcaagtgaag tgtgtggtggttggctccctggtgaccacacacagaaagttcaaaggtttgctgctgctg agcaggagccccctggctaaacccatcataaatccaagttacaatgacttctgtcccaga gatctgcctgttgcctcaggaagtgctgcttcacatatgaatgaatacaatgaagatcaa aagagagccattgagacagcttatgccatggtaaaacaacacccaggacttcccaagatt tgccttatccatggaccacctgggacaggaaagtcaaaaactattgtaggactcctgtcc cgtgttttgagagaaaacactaggaatgagaaaacagctcggaaaaaaaattccaagatt aagccaaaccgttttctagtttgtgcaccatcaaatgctgctgttgatgaactcatgaaa aagatcatcattgcatttaaggaaaaatgccaaaacaaacaggagcctttgggaaattgt ggtgatatcaaattagtgcgacttggtgctgaaaaatcaatcaacaatgaggtccgggga ttcagcctggataagcaagttgaacacagaatgaaacgaaagccgggtgactgtgaccag gacattcagaagaagaaggaagctctggaccagaagctggacatgctctctcgagagcgt gccatgcacaaatgtgagaagagagagagtcaaatgttaaatgatgaaattggcagactt gcaaaggagaggcaacaactcgcttctcagctaaaggaggttcgggggcactcccagaaa gtgcaggcagacatcatcctggagtctgacatcatctgctgcacactgagcaccagcggg gggagcctgctggaatctgctttctcccggcagggccttgaccccttcagctgtgtcatc gtggacgaggcagggcagtcctgtgaggtggaaacactgattccactgatccatcgctgt aataaacttgtcctcgttggagatcccaaacagctccctcctactgtcaaatcagtaaaa gctcagcagtatggctatgaccagtctctgatggcccgtctgcagaggcacctggaggag caagtgcagaggaatgtgctgtgcagcctgcctgtggtgcagctgactgtgcagtacagg atgcacccagatatctgcctcttcccatccaactatgtttatggcaggactctaaaaact gccaaggcaatagaggagaacagatgttcttcagagtggccattccaaccctacctgatt tttgatgtagctgatggtcgtgaggagcgagacaatgaatcttacagcaatcctcgggaa gtgaaactggtgatggagttaattaaaacaattaaagaaaaaaggaaggatctgggcctt cgtcgcattggaataattaccccttacagtgcacagaaaaggaaaattcaggaacaactg gacagtgtattcaagaataacagcccaggagaagtggacacagtggatgcattccagggc cgagagaaggactgcatcatcgtgtcctgtgtgcgggctaacagctccgagggctccact ctggcatatgtgcaggcaaacagcaccaaaggatccattgggtttctggcgagcctccaa cgactgaatgtcaccatcacccgagcccgcttcagcctcttcatcctgggccggctgcag acactcatggaagataaaaactggaatcacttgattcaggatgctcagaaaagaggtgcc attattaggacaacagaaaaaaattacaagaaagaggctctgaggattttgaagctcagg ccaccagggcagcccccagccaaaggagggacgatgacatctcctgtgctgcaggctggt tcttccagtggcaagaggagcgagcctggaaattctgggaacagcccacaggaacttgct gctggccctggccatgcagtgccccaaggaagccgagggcccacacagcctgcagtggct gcagctgcagattccaggaggggcagtgcccctgcatctggggcagctccagctgcagat tccaggaggggcagtgcccctgcatccatgggggctgcagcacttgctgccattccagag aaaccacgggacccaaggctggcaagcctggccagtcgaactgaagccaaaggcacggag cagccctcgagagatggccatcggtcagcccagagcaatccaggatcaacaccacagcaa ggcctggatgtgtcctcagctgccagggatcacatttgcagaacagaaaatgccaagaag gcccagcaaacagcaggacagtgcagtttgcttcccacagcccctcacacagctcagcac gagtgtgactggagagcagctgtgtccaaaagcggttccaaagctcccagtgaaggaggt cagagcagaagccatgagtggaacaaagactctcgtggtttaccaaggagaccatcccag gaatcaccagagaacacagaatcaagctctgccaagagaagaaagatttttccctga

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