Parus major (Great Tit): 107212475
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Entry
107212475 CDS
T04864
Symbol
TNRC6C
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X3
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaj03019
]
107212475 (TNRC6C)
03036 Chromosome and associated proteins [BR:
pmaj03036
]
107212475 (TNRC6C)
Messenger RNA biogenesis [BR:
pmaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107212475 (TNRC6C)
Chromosome and associated proteins [BR:
pmaj03036
]
Eukaryotic type
Gene silencing
piRNA pathway
107212475 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
RRM_1
UBA
RRM_occluded
DUF4718
THOC7
Motif
Other DBs
NCBI-GeneID:
107212475
NCBI-ProteinID:
XP_015501249
Ensembl:
ENSPMJG00000008310
LinkDB
All DBs
Position
18:complement(7656392..7751681)
Genome browser
AA seq
1974 aa
AA seq
DB search
MEEKKKKKQEEKKKKEGAQKKAAEQKTKVPEPIKTSLSQPQPAGTGTSTSTSTLTNSSNG
KRASANGQQPAASRYLPREVPPRFRQQEQKQLLKRGQPLPTGALSAPGPAPGTAAAGASP
PPPPPPQQGAAGQQHPGKGQPDLSHSGLGDHYENSHWGQQPAFRSEGNCSWDKVIIDRTD
KEAWPSITGAETESASECTTDTDSASNCGSENSSMATGSAQGNFTGHTKKTNGNNGANGA
LVQSTSNQSALGAGGANGNGGSARVWGVAAGSSSGLAHCSASGGDGKMDNMMGDGRSQNC
WGASNSNAGMNLNLNPNANPAAWPVLGHEGTVGAGNPSSICSPVSAIGQNMGNQNGNPTG
TLGAWGNLLPQESTEPQTSTSQNVSFSVQPQNLNTDGPNNTNPMNSSPNPINAMQTNGLP
NWGMAVGMGAIIPPHLQGLPGANGTAVSQVSGGSGEGMGSSVWGMSPGNPATGNSNSGFS
QGNGDTVNSALSAKQNGSSSAVQKEGNGANAWDSGPPSGPGVLAWGRGGGGVGSVHSGAW
GHPNRSASNGVNGEWGKPPNQHSNSDINGKGSTGWDSSSVTSPNPAMQQGNEQMNSWAKA
AASGTTASEGSNDSGGSQNEGSTGREGAGEGRRRDKGMIDQGQVQLPRNDLDPRVLSNTG
WGQTPVKQNTAWEFEESPRSERKNDNGTEAWGCAATQSSNSGGKNDGSIMNSTNTSSVSG
WVNSPPAAVPTNTGWGDNNNKAPNGPGGWGESASSTTVNNAAAAKSGHAWSGTANQEDKS
PTWGEPQKPKSQNWGDGQKSNPSWTSGGGDWTDSSSVPGHLGDGKKNGSGWDSDNRSGSG
WNDSTKSGTSGWGNGTNSKANTGTSWGESLKPGPQQNWANKPQDNNVSNWGGAASVKQTG
SGWVGGPVPAKQKENCEATGWEEPSPPSIRRKMEIDDGTSAWGDPNYNNNKTVNMWDRNN
PIIQSSTTTNTTTTSTIINTNMVEPQPSHQSSAQPNRSPLLGPAGWGEMPAVHTKSEASW
GEPSSPSAAVDNGTSAWGKPPSSGTGWGENPAEPAGTYGRTNAPAAAPALCKPASKSMQE
GWGSGGDEVNLSTSQWEDEEGDMWNNTASQESSSSCNSWGNAPKKGLQKPKTNPRLSLGT
FWRTERKRLLKDFVIEKLHRDLLKGMKTSSKQDEAWIMNRLIKQLTDMGFPREPAEEALK
SNSMNLDQAMSALLEKKVEMDKRGMGVTDYNGMVTKPLGCRPPPISKESSMDRPTFLDKL
TLSFSNQDGGLVEEPTTSPFLPSPSLKLPLSNSALPNQTLGGIASGLGMQNLNSSRQIPS
GNLGMFGNSGAAQARTMQQPQQPPVQPLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIG
LSPAQLTSPINNPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQEQQVARTI
NNMQQQIQQHQRQLAQALLMKQQPPPPHLSLHPSAGKSAMDSFSPHPQAPGLPDLQTKEQ
QSSPNTFAPYPLAGLNPNMNVNNMDITGGLSVKDTSQSQSRLPQWTHPNSMDNLSSAASS
LDQNSSKHGAIPGGLSIGPPGKSSLDDSYGRYDLIQNSESPASPPVAVPHSWSRAKSDSD
KISNGSSINWPPEFHPGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSG
GSSPTSSQNATLPSSSAWPLSASGYSSSFSSIASAPSIAGKLSDIKSTWSSGPISHTQAS
LSHELWKVPRNTTAPTRPPPGLTNTKPSSTWGASPLGWTSSYSPGSAWSTDSSGRTSSWL
VLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGN
TTILAEFAGEEEVNRFLAQGQALPPTSSWQSNTGSTPSRLGSSGSSHGLVRPDTGHWNPP
CLGGKGSSDLLWGGVPQYSSSLWGPPSADDGRVIGSPTPLNTLLPGDLLSGESI
NT seq
5925 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaagcaggaagaaaagaaaaagaaggaaggtgctcagaaa
aaggctgctgaacaaaaaaccaaagtgccagaacctattaagaccagtttaagccagccc
caacctgccggtaccggtaccagtacttccaccagcactctcaccaacagcagcaatggc
aagcgcgcgtctgctaacgggcagcagcctgcggcgtcccgctacctgccccgagaggtg
cctccccgcttccgccagcaggaacagaagcagctcctaaagcgggggcagccactgccc
accggggctctgagtgcccccggcccggcgccgggcacggcagcagcgggagccagccct
cctcctcctcctcctcctcagcagggagcggcgggacagcagcatcccggcaagggccag
ccagatctcagccacagtggattgggagaccattatgagaattcccactggggacagcag
cccgctttcaggagtgaaggcaactgcagctgggataaagtgataatagacaggactgac
aaggaagcgtggccttccattaccggagctgagactgagtctgcctcagaatgtactaca
gacactgactctgcctccaactgtggctcagagaacagtagcatggctacagggagtgcc
caaggcaacttcactggacatacaaagaaaactaatggcaataatggcgccaacggagca
ctcgtccaaagcacttctaaccagagtgcccttggagctggtggagcaaacggcaacggc
ggctcggccagggtgtggggggtggctgcgggctccagctctggcctagctcactgctct
gccagtggtggggatggaaagatggacaacatgatgggagacggtagaagtcagaactgc
tggggtgcttccaactcgaatgctggcatgaatcttaaccttaaccctaatgccaatcca
gctgcctggcctgtacttggacatgaaggaactgtgggagcaggcaacccttccagtatt
tgcagtccagtcagtgccataggtcagaacatgggcaaccagaatgggaacccaacaggc
accttaggtgcttggggaaacttgctgccgcaagagagcacagaaccacaaacgtccact
tctcagaatgtgtctttcagcgtacaacctcagaaccttaacactgatggaccaaataac
actaaccccatgaactcttcaccaaaccctatcaatgcaatgcagacaaacggactgccg
aactgggggatggccgtgggcatgggggccatcatcccgccccacctgcaaggccttcct
ggtgctaacggaacagcggtttctcaagtcagcgggggcagtggtgaaggaatgggcagt
tcagtatgggggatgtccccaggtaatcctgccacaggaaacagcaattctgggttcagt
caggggaatggagacactgtgaactcagcattaagtgctaaacaaaacggatccagcagt
gctgtgcaaaaggaaggaaacggagcgaacgcgtgggactcggggcctccctctggcccc
ggggtcctggcctggggcaggggcggtggcggggttggcagtgtgcattctggagcctgg
ggccaccccaaccgcagcgccagcaacggtgtcaacggcgagtggggcaagcccccaaac
cagcattccaatagtgacatcaacgggaaaggatcaacagggtgggatagctcgagtgtt
accagtccgaatcctgccatgcagcagggcaatgaacaaatgaactcttgggccaaagct
gcggcatctggcaccacggctagtgaaggaagcaatgacagcggtgggagtcaaaatgaa
ggcagtactgggagggagggggctggagagggcaggaggagagacaaagggatgatagac
caagggcaagttcagttgccaagaaatgaccttgaccccagggtcctgtccaatacgggg
tggggacagacccctgtgaagcaaaacactgcctgggaatttgaagagtccccaaggtct
gaacggaagaatgacaatggaactgaggcctggggttgtgcagctactcaatcttcaaac
tcaggggggaagaacgatgggtccatcatgaacagtacaaatacctcttcagtatctggg
tgggtcaactctccaccggcagctgttccaacaaatacaggttggggagacaataacaac
aaagcaccaaatggcccaggggggtggggagagtcagcaagctctactactgttaataat
gctgctgctgccaaaagcggccacgcttggagtgggaccgcaaatcaggaggacaaatca
cctacctggggtgaacctcagaaacccaaatctcaaaactggggagatggacagaaatca
aatccaagctggacttcgggaggtggagactggacagattcatcatctgttcccggacac
ttgggtgatgggaagaagaatggatctggatgggattctgataataggtcagggtctggc
tggaatgattccacaaagtctgggaccagtgggtgggggaatggcacaaacagcaaggct
aatacaggtacaagttggggggaatctttaaagccaggcccccaacaaaattgggctaat
aaaccccaggacaacaatgtgagtaactggggaggagctgcttctgtaaaacagacgggg
tcagggtgggttggtgggccagtgccagccaaacaaaaagagaactgtgaggcaactggc
tgggaagagccatccccaccgtccattcgccgcaagatggaaatcgatgatggtacctca
gcttggggcgacccaaattacaacaacaacaagactgtaaacatgtgggatagaaataat
cctataattcagagcagtaccacaaccaacaccaccaccactagcaccattatcaacacc
aacatggttgaacctcagccatcgcaccagtcaagtgcccagccgaaccggtccccgctg
cttggcccagcaggctggggagagatgcctgctgtccacaccaagagcgaagcttcctgg
ggagagccctcctccccttctgctgcagttgataatggcacttcagcatgggggaagccc
cccagcagcggcaccgggtggggagagaatcctgccgagccagcagggacctatggaaga
acaaacgctccagctgctgccccagcactgtgcaaaccagcttcaaaatctatgcaagaa
ggctggggcagtggtggggatgaagtgaatctcagtactagtcagtgggaagatgaagaa
ggagatatgtggaataatactgcttcacaagagagcagctcctcctgtaattcctggggg
aatgccccgaagaaaggacttcaaaagcccaaaacaaatccgcgcttgtcccttggtact
ttctggagaactgaaaggaagagacttcttaaggattttgtgatagaaaagctgcacaga
gatcttttaaagggcatgaagacatctagcaagcaggatgaggcctggatcatgaaccgt
ctgataaaacagctcacagacatgggcttccctagagagccagcggaagaggccttgaag
agcaacagtatgaatctcgatcaggccatgagtgctctgctggaaaagaaggtggaaatg
gacaagcgtggaatgggagtgaccgactataatggaatggtcaccaaaccccttggctgc
cgcccaccaccaatctccaaagagtcttccatggaccgccccaccttccttgacaagctc
accctttctttctccaatcaggatggcggcctagtggaagagcccactacttcaccattt
ttgccttcaccaagcctgaagctccccctttcaaacagtgcactccctaatcagaccctg
ggcgggattgcctcagggctgggcatgcaaaacttgaattcttctagacagataccgagt
ggcaatctgggtatgtttggcaatagcggagcagcacaagccaggaccatgcaacagccg
cagcaaccgccagtgcaacctcttaattcatcccagcctagtcttcgtgctcaagtgcct
cagtttctatcccctcaggttcaagcacagcttttgcagtttgcagcaaaaaacattggt
ctcagccctgcacagttaacctcgccaattaataatcctcagcatatgacgatgttgaac
cagctctatcagctgcagctggcgtaccaacgtttacaaatccagcagcagatgttacag
gctcagcgtaacgtttccggacccatgagacaacaggagcagcaagttgcacgtacaatc
aataacatgcagcagcagatccagcagcaccagcgccagctggcccaggccctgcttatg
aagcagcagcctccccctccacatctatctttgcacccctctgcaggcaaatcagccatg
gatagcttttcaccccatccccaggctcccggccttcctgacctgcagaccaaagagcaa
cagtcttcaccgaacacctttgctccttaccctcttgctggactgaacccgaacatgaat
gtaaataacatggacattactggtggtttgtcagtgaaggacacttctcagtcccagtct
cgccttcctcagtggacacaccccaactcaatggataatctgtctagtgctgcttcttct
cttgaccagaactccagcaagcacggtgctatccctggaggtttgagtattggtcctccg
ggaaagtcctccctcgatgactcctacggccgctatgatctgatccagaacagtgagtct
cctgccagcccacctgtagctgttcctcacagctggtcacgtgccaaatctgatagtgat
aagatttccaatggctccagcataaactggccaccagagtttcacccaggagtgccatgg
aaaggactgcagaatattgatcctgaaaatgaccccgatgttactcctggcagtgttcca
actgggcctaccataaacaccacgatacaggatgtgaatcgctatctgctcaagagtgga
gggtcatccccaacatcatctcagaatgccacgctgccttcatcgagtgcctggccgctt
agtgcctccggctacagtagctctttcagcagcattgcatctgcacctagcattgcaggt
aaactgtcagacatcaagtccacgtggtcctctggcccaatctctcacacccaagcctct
ctgtcccacgaactctggaaggtacccagaaacactacagctccgacgagacctcctcca
ggcttaaccaacaccaagccatcctccacgtggggtgccagtcccctgggctggaccagc
tcttactcccctggttctgcatggagtactgacagctcagggagaacaagcagctggctg
gttcttcggaacctcaccccccagatcgatggttctacactgcggacactgtgtttgcaa
catggccctctcatcacattccacttgaacctgacccaagggaatgctgtggtccgatac
agttccaaggaggaagcagccaaggcccagaaatctctgcacatgtgtgtcctgggcaac
accaccatcctggcggagtttgccggcgaggaagaagtgaatcgtttcctggcgcagggg
caggcgctgccgcccacctccagctggcagtccaacactggatccaccccgagccgcctg
ggctcctcgggcagctcccacgggctggtgcgccccgacaccggccactggaaccccccg
tgcctggggggcaagggcagcagtgacctgctgtggggaggggtaccccagtactccagc
agcctttggggacccccgagcgccgacgacggcagagtcatcgggagccccacgcccctc
aacaccctcctgccgggggatctgctcagcggggaatccatctag
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