Parus major (Great Tit): 107212860
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Entry
107212860 CDS
T04864
Symbol
BRIP1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03440
Homologous recombination
pmaj03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107212860 (BRIP1)
03460 Fanconi anemia pathway
107212860 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmaj03400
]
107212860 (BRIP1)
Enzymes [BR:
pmaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107212860 (BRIP1)
DNA repair and recombination proteins [BR:
pmaj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
107212860 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
107212860 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
HBB
ResIII
DUF2703
ARCH_RTEL1
Motif
Other DBs
NCBI-GeneID:
107212860
NCBI-ProteinID:
XP_018864181
Ensembl:
ENSPMJG00000019830
LinkDB
All DBs
Position
19:7377018..7424773
Genome browser
AA seq
1258 aa
AA seq
DB search
MASDGAEYTIGGVKILFPCKAYPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSA
LSWQQALYEKSVPTSSSDKEDRKAEPSPPCHCKCHSQPKSNEAATSVTHSAPSSANYPDT
GTSRKPGSSLTNTECKENETLASKLSAKKKLSLHDSENDDFQVDRKRIRPLETEQQQVRK
RHCFAKGVQFVDALEVYHQRKNGELTVHSEKSMKTTTFSPQTPPGPCTECSCSSGKEPDK
DPSHTKKKENGDRLCVPKIFFGTRTHKQITQISRELKRTAYSCAPMTILSSRDYTCIHPV
VSNSSNRNEMCVELLEGKHGRSCSYYHGVHKLSEHHALQPASVYQAWDIEDLVSLGRKLR
ACPYFAARELMVGADIVFCPYNYLLDPQIRDSMDIKLKDQVVILDEAHNIEDCARESVSY
GVTESQLRAAREELDFMVNNNIRQKHHEPLRAVCCSLINWLQESSGQLVERAYETACKVW
SGKEMLNFLHQMGITGITFPILQKHLVAVLEKEEKVSMHGREELIGVPVVSPATQIVLKG
LFMVFSCLFKENSRFADDYKVALQQTYTWLTENQRDDADSGSFFTRPKHKKSSRQKTLVH
MLNFWCLNPAVAFSELNEVRTIVLTSGTLSPMDSFSSELGVKFSIQLEANHVIRNSQVWV
GTVGVGPNGRKLCATFQHTETFEFQDEVGALLLSVCQTIGQGILCFLPSYKMLDKLKDRW
MHTGLWRKLEDVKTVIAEPQGGAKSDFDELLKIYYDAIKCKGEKDGALLVAVCRGKVSEG
LDFCDENARAVVTIGIPFPNVKDLQVELKRKYNDQHKSTRGLLSGSQWYEIQAYRALNQA
LGRCIRHRNDWGALILVDDRFRNNPNKYITGLSKWIRQRIQHHGSFGSALESLHAFALRN
QRGGDPSSEHSTEFPAHSRDLSQGSQQEATVPLSPDVPATSQEENLGSVHFTAAISSVHP
TAWDQPSDSMAAVKQSDQEVDVESHSHHEKQRRKHMDSTPKIPAIKIETEKMNGWTNADT
VGENCCSEPLTSTPVAKNCRATASSRQEHVKGPSDIIDHLNQCQSSSIAEHQPSGPESCL
DTTHFSVKNAEAPGAEGHPGKLQFPAEPCRELPSAAGRAEPSALNVDEDEDESIYFTPEL
YDDADPEKQGTEAPLPACCTTGNWVECGNSTDPADLFGTNTSETQNVTEKAEAGRSPHGI
MENVRSRDSAVEAVEVAAAAGAEQGVSQEMDTPKRKISLSRSRNKGVLSFPLGSSGTC
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgatggggcagaatataccattggaggggtgaagatcctcttcccctgcaag
gcttacccctcccagcttgctatgatgaatgctattgttaaaggcttgaataacaggcag
cactgtttgctggagagccccacaggaagtggcaaaagcttggcattactttgttctgca
ttatcatggcagcaggctttgtatgaaaaatccgtgccaacctcatcgagtgacaaggag
gacaggaaggcagagccatccccaccgtgtcactgcaagtgtcactcccagcccaagagc
aacgaggctgcaacgagtgtgactcacagtgctccttcttctgccaattatcctgacaca
ggaacttccagaaagcctggaagctcactgacaaacacagaatgcaaggaaaatgaaaca
ctggcttcaaaactgtctgccaaaaaaaagttatcccttcatgacagtgagaacgatgat
tttcaagtagacaggaaaaggattcgtcctttagaaacagagcagcagcaggttagaaaa
cgtcactgctttgcaaaaggagtccagtttgttgacgctttagaagtttatcatcagaga
aaaaatggagagctgactgttcactctgaaaaaagcatgaaaaccactactttttctccc
caaacacctcctggcccttgcactgagtgttcctgttcttctggaaaagaacctgataaa
gatcccagtcacacaaagaagaaagaaaatggagatcggttgtgtgttcccaagattttt
tttgggacacgaacacacaagcaaattacccagatcagcagggagctgaagaggacagcg
tattcctgtgcccccatgacaatcctttccagcagggattatacctgtattcatccagtg
gtgtccaacagtagtaacaggaatgaaatgtgtgtagaattgctggaaggaaaacatggc
aggtcctgctcttattaccacggtgttcacaagctcagtgagcaccatgccctgcagcct
gccagtgtgtaccaggcttgggacattgaagacctggtgagcctgggcaggaagcttcgt
gcctgtccctattttgcagccagagagctcatggtgggggcagacatcgtgttctgtcct
tacaattatctcctggacccacagatccgggacagtatggacattaagctaaaagaccaa
gtagtcattttggatgaagcccacaacattgaggactgtgctcgggagtccgtgagctac
ggggttaccgagagccagctccgggctgcccgagaggagctcgatttcatggtcaacaac
aacatcaggcagaagcatcatgagcccctccgagctgtgtgctgctccttgataaactgg
ttgcaggaaagctctgggcagctggtggagagagcctatgaaactgcctgtaaagtgtgg
agtggcaaagaaatgctcaactttttgcaccaaatgggaataactgggattacttttccc
attttacagaaacatcttgttgctgtcctggaaaaagaagaaaaagtgtcaatgcatggg
agagaggaacttattggggtgccagtagtgagccctgcaacacagattgtgctcaaaggc
ctgttcatggtcttttcctgtctctttaaagagaacagcaggtttgcagatgattacaag
gttgctctacagcaaacttacacctggttgactgaaaaccaacgtgatgatgcagattca
ggttccttcttcacaaggcccaagcacaaaaagagttcaaggcagaaaacccttgtccac
atgctaaatttttggtgcttgaaccctgctgtggctttttctgagttaaatgaagttaga
acaattgttctgacatcaggcacactgtctcccatggattccttttcctcagagcttggt
gtgaagttttccattcagctggaggcaaatcacgttatccggaattcccaggtttgggtc
ggcacagtcggagtgggccccaacgggcggaagttgtgcgcgacgttccagcacacggag
acctttgagttccaggatgaggtgggagcactgctgctttcagtctgtcagacaattggc
caaggaattttgtgctttttaccatcctataagatgctggacaagttaaaggatcgttgg
atgcacactggcttgtggagaaagttggaggatgttaaaacagtcattgcagagccccag
ggaggggccaagagtgactttgatgagttgctgaaaatctactatgatgcaatcaaatgt
aaaggagagaaagatggagctctcctggtagctgtgtgcagagggaaggtcagtgagggg
ctggatttctgtgatgagaacgccagggcagtcgtgaccatcggaatcccctttccaaat
gtgaaggaccttcaggttgaattaaagaggaaatacaatgaccagcacaaaagtacaaga
ggccttttatcagggagtcagtggtatgaaattcaagcttacagagctctcaaccaagcc
ctgggaaggtgtataaggcacaggaatgactggggggctctaattttagttgacgaccgc
ttcaggaataacccaaataaatacataactggattgtccaagtggatccggcagcggatc
cagcaccacggcagtttcggcagcgctctggaatccctgcacgccttcgccctcaggaac
cagaggggtggggatccctcctcagagcacagcactgaattccctgcacattccagggac
ctctcacaaggctctcaacaagaggccaccgttcctctgtccccagatgttcctgctaca
agtcaggaggaaaatttgggctcagttcattttactgcagccatcagctcagttcatccc
acagcatgggatcagccaagtgacagcatggcagcagtgaaacaaagtgaccaggaagtt
gatgtagagagccattctcaccatgaaaaacagagaaggaaacatatggacagcaccccc
aaaattccagcaattaaaatagagacagaaaaaatgaatggttggaccaatgctgatact
gtgggagagaattgctgctctgaaccactgacttcaactcctgtagccaagaactgcagg
gccacagcaagcagcagacaggagcatgtgaaagggcctagtgacattattgatcattta
aatcaatgccaatcatcatcaattgcagaacatcaaccaagtggaccagaatcatgtttg
gacacaactcatttttcagttaaaaatgctgaggctccaggtgctgaaggacatcctggt
aaactccagtttccagctgagccctgcagggagctcccttcagcagcagggagagctgag
ccttcagcattaaatgtggatgaggatgaggatgaaagcatttacttcaccccagagctc
tatgatgatgcagatccagagaaacagggaactgaagccccacttccagcctgttgtacc
actgggaattgggtggaatgtgggaactccacagaccctgctgatctttttggcaccaac
acctcagaaacacagaatgtgactgagaaagctgaggctggcagaagtccccatggaatt
atggaaaatgtgaggagcagggacagtgcagttgaggctgtagaggtggcagctgcagca
ggagcagagcagggagtatctcaggagatggacacccctaaaaggaaaatcagcctttcc
agatcccgaaataaaggtgtgttatcctttccactgggcagtagtggcacctgctga
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integrated database retrieval system
