Parus major (Great Tit): 107213336
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Entry
107213336 CDS
T04864
Symbol
SAMHD1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03250
Viral life cycle - HIV-1
pmaj04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
107213336 (SAMHD1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
107213336 (SAMHD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmaj03400
]
107213336 (SAMHD1)
DNA repair and recombination proteins [BR:
pmaj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
107213336 (SAMHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
PDEase_I
HD_assoc_2
HARE-HTH
PPP1R21_helical
Motif
Other DBs
NCBI-GeneID:
107213336
NCBI-ProteinID:
XP_015503144
Ensembl:
ENSPMJG00000001719
LinkDB
All DBs
Position
20:768295..793801
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AA seq
603 aa
AA seq
DB search
MGSPAGPPAKRARCERPRGPGSDPRLWDTERLCQHLSRCGVGSPSLLRRFRESGITGRML
LDLPASAPELIRVCCPAERLEVLACLTQLRPQHVEVMKVFNDPIHGHIEFHPLLIQIIDT
PQFQRLRYIKQLGGTYFVFPGASHNRFEHSLGVGYLAGCLVRTLKERQPDLDITQRDILC
VEIAGLCHDLGHGPFSHMFDGRFIPLTRPDLQWKHETASVQMFEHLITSNKLEEVMKSHG
LVLEEDMLFIKEQIGGPIDETACVKSWPYRGRPKEKSFLYEIVANKKNGIDVDKWDYFAR
DCHHLGIPNNFDYKRLLIFTRVCEVKNQKHICTRDKEVGNLYEMFHTRNCLHRRAYQHKT
GNIIEIMITEAFQKADKFFEIRGSGGKVYRISTAMEDMEAYTKLTDCIYLDILNSSHPEL
EEAREILRKIERRKLYKFLGETRPESKMEIVKSNSLAESIANCKPQKDPPDVELKAENFI
VDVISMDYGMKEQNPIDKVHFYCKADPSKAVKISKEQVSKLLPIIFMEQVVRVYYKSQDQ
RIISAAKQYFVQWCMENNFTKPQDGDVVAPHLTPMKETWNNVTDDEHRRASEPSCKQRLS
FDE
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggggagccccgcgggccctcccgccaagcgcgcgcggtgcgagaggccccgcggcccc
ggcagcgacccgcggctgtgggacacggagcggctctgccagcacctctcccgctgcggc
gtgggcagtcccagcctgctgcgccgcttccgagagagcgggatcaccgggaggatgctg
ctggacctgccggcctccgcccccgagctcatccgtgtctgctgcccagctgagcgactg
gaagtgctggcgtgcctgacacagctgcggccgcagcacgtggaggtgatgaaggttttt
aatgatcctattcatgggcacattgaatttcatcccctgcttattcagatcatcgacacc
cctcagttccagcgcctccggtacatcaagcagttgggtggcacgtactttgtttttcca
ggagcctctcacaaccgctttgaacactccctgggggttggctaccttgcaggatgtctg
gttcgtacactgaaggagagacaaccagacctggatataacccagcgagacatcctctgt
gtagaaattgctgggctttgtcatgatttgggtcatgggccattttcacacatgtttgat
ggaagatttattccactcactcgtccagatttgcagtggaagcatgaaactgcttctgtt
caaatgtttgagcacttgatcacttccaataaactagaagaagtcatgaagtcacatggt
cttgttctggaggaagatatgttgttcatcaaggaacagataggagggcctatagatgaa
actgcttgtgtgaaatcgtggccctaccgtggtcgtccaaaggagaaaagtttcctctac
gagattgtagctaataaaaaaaatggcattgatgttgacaagtgggattattttgcaagg
gattgccaccacctgggaatcccaaataattttgactataagcgattgcttatcttcact
cgggtctgtgaagtgaaaaaccagaagcacatctgtactcgtgacaaggaagttggaaat
ttgtatgagatgttccacacccggaactgcctgcaccggagagcataccagcataagact
ggcaacatcattgaaataatgataacagaagcttttcaaaaagcggacaaattttttgaa
ataagaggctctggaggaaaagtgtatcggatttctacagcaatggaggacatggaagcc
tacactaaactaactgactgtatctacctggacattcttaactcaagtcatccagaactg
gaagaggcacgagaaattttgcgtaaaatagaacgacgtaaattatacaagtttttagga
gagactcgacctgaatcaaagatggaaattgtaaagagtaatagcctggcagaaagcatt
gctaattgcaagccacagaaggaccctccagatgtggagctaaaggctgagaatttcata
gttgatgttatcagcatggattatggaatgaaggaacagaatccaattgataaggttcac
ttctattgcaaggccgatccttccaaggcagtcaaaatcagtaaagaacaggtttcaaag
cttttacccataatatttatggagcaggttgtccgggtttattacaaaagtcaggatcaa
cgtattatttcagctgcaaaacagtactttgttcagtggtgtatggagaataatttcacc
aaaccacaggatggtgatgttgtcgctcctcatctaactccaatgaaggaaacctggaat
aatgtgacagatgatgaacacaggagagcctcagagcccagctgcaaacaaaggctttct
tttgatgagtaa
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