Parus major (Great Tit): 107214070
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Entry
107214070 CDS
T04864
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X2
KO
K13126
polyadenylate-binding protein
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03015
mRNA surveillance pathway
pmaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107214070 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
107214070 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaj03019
]
107214070 (PABPC4)
03041 Spliceosome [BR:
pmaj03041
]
107214070 (PABPC4)
Messenger RNA biogenesis [BR:
pmaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107214070 (PABPC4)
mRNA cycle factors
Stress granule specific factors
107214070 (PABPC4)
Spliceosome [BR:
pmaj03041
]
Complex C
Other components
Complex C specific factors
107214070 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RBD_DEAH11
RRM_occluded
RRM_10
RBD_RDR6
DUF6262
POP1_C
Motif
Other DBs
NCBI-GeneID:
107214070
NCBI-ProteinID:
XP_015504570
Ensembl:
ENSPMJG00000000829
LinkDB
All DBs
Position
23:1525011..1538910
Genome browser
AA seq
629 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPANAPASRGLPAAA
QRVGVGTAAQNLAPRPPVAAPAPRAVPPYKYASSVRSPHPGVQPLQAPQPAVHVQGQEPL
TASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRS
KVEEAVAVLQAHQAKKEAAQKVGVVAATS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaacacggccgccagcagttaccccatggcctcgctgtacgtgggggacctgcacccc
gatatcaccgaggccatgctctatgagaagttcagcccggctggccccgtgctgtccatt
cgggtctgcagggatatgatcacccgccgctccctgggctacgcctacgtcaacttccag
cagcccgcagatgctgagcgagctctggataccatgaattttgatgtgatcaaagggaaa
cccattcgcatcatgtggtctcagagggacccttccctgaggaaatcaggagtggggaac
gtcttcatcaagaacctggacaaatccattgataacaaggcactttacgacacattctcg
gcgtttggaaacattttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcctttgtgcactttgagacccaggatgctgcagatagggccatcgagaagatgaacggc
atgctgctcaacgaccgcaaagtattcgttgggagattcaagtctcgtaaagagagggag
gctgagctgggagccaaggcaaaggaattcaccaatgtctatattaaaaactttggggat
gacatggatgatgaaagactaaaggagctctttggcaaatatggtaaaactctgagtgtt
aaagtaatgacagaccccactggaaaatccaaaggctttggctttgtaagctttgaaaag
catgaagaggccaacaaggcagtggaagagatgaatgggaaggacatcaatgggaaaatg
ctgtttgtgggcagagcacagaagaaggctgagcgccaggcagagctgaaaagaaggttt
gaacagctaaaacaggagagactcagcaggtaccagggtgttaacctgtacattaaaaac
ctagatgacactatagatgatgaaaaactgaggaaggagttctcaccttttgggtcaata
acaagtgccaaggtgatgctggaagatggacggagcaaagggtttggctttgtctgcttt
tcctctccagaggaggccaccaaagctgtgacagagatgaacgggcgcatcgtgggctcc
aagcccctctatgtggcactggcccagaggaaggaggagaggaaggcccatctcaccaac
cagtacatgcagcgcatcgctggcatgagggccttgcctgccaacaccatcatcaaccag
ttccagcctgctgctggcggctatttcatgcctgctgtgccccaggctcagagcagaccc
acttactatgcacccaaccagatgacacagatgagacccaacccacgatggcagcaagga
gggagacctcaaggcttccagggaatgccgaatgccatgcgccagtcggggccccggccc
gccctgcgccacctggcccccgccaacgctccggcctcccggggcctccccgctgctgcc
cagagagttggtgttggcacagcagcacagaatttggctccccgtcctcctgtagctgcc
cctgctcccagggctgtccctccttacaaatacgcctcaagtgtccgcagcccacaccca
ggcgtccaacctctgcaggcacctcagcctgcagtgcatgtgcagggccaggagccactg
acagcctccatgctggctgctgcccctccccaggagcagaaacagatgctgggagaacgt
ttgttccctctgatccaagctatgcaccccagcctggcggggaagatcacaggaatgctg
ctagagattgacaactcggagctgctgcacatgctggaatctccagagtccctccgctcc
aaggtggaggaggccgtggcagtgctgcaggctcaccaagccaagaaagaagctgcccag
aaggtgggtgtggttgctgctacctcttga
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