Parus major (Great Tit): 107214581
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Entry
107214581 CDS
T04864
Symbol
SMG5
Name
(RefSeq) protein SMG5 isoform X1
KO
K11125
protein SMG5
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107214581 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaj03019
]
107214581 (SMG5)
03032 DNA replication proteins [BR:
pmaj03032
]
107214581 (SMG5)
Messenger RNA biogenesis [BR:
pmaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107214581 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
107214581 (SMG5)
DNA replication proteins [BR:
pmaj03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
107214581 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
107214581
NCBI-ProteinID:
XP_015505623
Ensembl:
ENSPMJG00000000283
LinkDB
All DBs
Position
25LG1:complement(734853..762704)
Genome browser
AA seq
1048 aa
AA seq
DB search
MSQSGGAAGESGEPEAKVLHTKRLYRAVVEAVHRLDLILGNKAAYQDVFKPENISLRNKL
RELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGI
GFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASEKEMEWAQMACHRCLVYLG
DLARYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEATYCYLRCI
QSEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRGKDIKRLLVSFMYLQSLLQ
PKSSSLDSELTSLCQSVLEDFNLCLFYLPSPPNLSSTTEDEEEYENGYSFLPDLLIFRMV
IICLMSVHSLKRAGSKQYSAAIAFTLALFSHLINHVNIRLQAELEEGENPVPAFQSDGTD
DQEPREPVNSIEKEAEAELANHQPSEEQRKNDCKKSKKYSRLSCLRRRRHPQKVDESDLS
EGFDSDSSQSSIKGSDGSESGSEKSDEEAEAAFDVETDSDMNSQESRSDLEDMEDEPGEE
GSSQGKSGPKEALKNCVDGSGLGDSKNPSISKTEAVDPAVNGPASLSTDASIASNLQAMS
TQLFQTKRCFRLAPTFSNILLKPNSEPPALKDGVEGKPCVNGDLEKPSLAEQDDVSDSEE
SISSNKSCRNERSLQEKLEIVTNEGLLLTVKVFLDWLRTNTDLIIMCAQSSQSLWNRLSV
LLNLLPSAADLQESGLALCDEVKDILSDAELPDLKANLLLPEDVALRNLPPLKNAHKRFN
FEQDRPIFSAVEESVVRICCIRSFGHFITHLQSGILQFNSELGIFISIAQSEQDNLLHQA
QAQFHMAAEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCQHL
ALVKQLATSGRFIIIIPRTVIDGLDFLKKENAGARDSIRYLEAEFKKGNRYIRCQKDVGK
SFERHKLKRQDLDAWNLYKILDSCKQLTVSQGSGEDDTTGMVTIITGFQLEDPSSFSVPM
QSAIQAATNANIEIKNVLEFYKQWKEMG
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgagccagagtggtggggccgccggcgagagcggcgagccggaggccaaggtgctgcac
accaagcggctgtaccgggcagtggttgaggctgtgcacaggctggatctcatccttggc
aataaggcagcttatcaggacgtgttcaagccagagaacatcagcttgaggaacaagctg
cgggagctgtgtgtgaagctgatgttcctgcatccagtggattatggaagaaaagcagaa
gaactgctctggagaaaggtttactatgaagttatccagctcattaaaacaaataaaaag
cacatccacagccgcagcaccctggagtgtgcataccgcactcacctggtggctggcata
ggattttaccagcaccttctgctctacatccagtcccactatcagctggagttgcagtgt
tgcatcgactggacacatgtaacggacccactcataggctgcaagaaacctgtgtctgcg
tcagagaaggagatggagtgggcacagatggcctgtcaccgatgtctggtttatcttgga
gatctagctcgctatcagaatgagctggcaggtgtggacacggagctgctggctgagcga
ttttactatcaagccctttctgttgcaccacaaattggaatgcccttcaaccaactgggg
acgttggcagggagcaaatactacaatgtggaagcgacctactgctacttacgctgcatc
cagtctgaggtgtctttcgaaggtgcctatgggaacctgaagcggctgtatgacaaagca
gccaagatgtatcatcagctgaagaaatgtgaaaccaggaagttgtctccaagcaagaaa
cgaggaaaagacattaagaggttgctggtgagcttcatgtacctgcagagtcttttgcag
ccaaagagcagctctttggattctgagctgacatctctctgccagtctgtgctggaggat
ttcaacctatgcttgttctacctgccctctcctcctaacctgagctcaactactgaagat
gaagaagagtatgagaatggctactccttccttcctgatctcctgatctttcgcatggtg
atcatctgccttatgagtgttcacagcctcaagagggcaggttccaagcagtacagtgca
gccattgccttcacactggccctcttctctcatctgataaatcacgtcaatattcgcctc
caggctgagctagaagaaggggaaaatcctgtcccagcctttcagagtgatggcacagat
gaccaggagccacgggaacctgtgaactcaattgagaaggaagctgaagctgagttggcc
aatcatcagcccagtgaggaacagcggaagaacgactgcaagaaaagcaaaaaatactct
cgtctctcctgtctgcgccgccgccgccacccccagaaggtggatgagagcgacctgagt
gagggctttgactctgactccagccagagctccatcaagggcagtgatggctcagagagt
ggttcagagaagagtgatgaggaagcagaagctgcttttgatgtggagacagattctgac
atgaacagccaagaatctcggtctgacttggaggacatggaggatgaaccgggtgaggag
ggaagcagccaaggcaaaagtgggcccaaagaggccttaaaaaattgtgtggatggcagt
gggctgggggactccaagaacccaagcatctctaaaactgaggctgtggatccagcagtc
aatgggccagcttccctgagcactgatgcaagcatagccagtaatctccaggccatgtcc
acccagctgttccagaccaaacgctgctttcgcttggctcccacgttcagcaacatcctc
ctgaaacccaacagtgaaccacctgccttgaaggatggggtagagggcaagccatgtgtc
aatggagatctggagaagcccagcttggcagagcaagatgatgtgtctgactctgaagaa
agcatttcaagtaacaaatcctgcagaaatgagcgatcccttcaggagaagttggagatc
gtgaccaatgaagggctgctgcttactgtcaaggtgttcctggactggctgaggacaaac
acagacctcatcattatgtgtgctcagagctctcagagcctgtggaacaggctgtctgtg
ctcctgaatcttctgccttctgctgcagacctgcaggaatcagggctggccctgtgtgat
gaagtcaaagatatcctgagtgatgctgagctcccagacctgaaggccaacctgctgctc
cctgaagatgtggccctgcgcaatctcccccctctgaaaaatgcacacaagagatttaac
tttgagcaggaccggcccattttctcagcagttgaggagtctgttgtgcggatctgctgc
atccggagctttggccacttcattacccacctgcaaagtggcatcctgcagttcaactca
gagcttgggatcttcatcagcatagcacagtcagagcaagacaacttgctgcaccaggcc
caggcccagtttcacatggctgcagaagaagctcgtcggaacaggctcatgagagacatg
gctcagcttcgactgcagctggaagtgtctcagctggagggaagtctccagcagcccaag
gcacagtcagccatgtctccttaccttgttccggacacccaggccctctgccagcacctg
gctcttgtaaagcagttggccactagtgggaggttcataatcatcatccctcgaacagtt
atcgatggcctagacttcctgaaaaaggagaatgccggtgctagggacagcattcggtat
ctggaggcagaatttaaaaagggaaacaggtacatacgttgccagaaagatgttgggaag
agctttgagaggcataaattgaagagacaagatttagatgcctggaatctctataaaata
ctggacagctgcaaacaactgacagtgtcccagggcagtggagaggatgacaccacggga
atggtcaccatcatcacgggctttcagctggaggacccgagctcgttctcggtgcccatg
cagtctgccatccaggcagccacgaatgccaacatagagataaaaaatgttctggagttc
tacaagcagtggaaagagatgggctga
DBGET
integrated database retrieval system
