Parus major (Great Tit): 107215078
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Entry
107215078 CDS
T04864
Symbol
CASC3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03013
Nucleocytoplasmic transport
pmaj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107215078 (CASC3)
03015 mRNA surveillance pathway
107215078 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaj03019
]
107215078 (CASC3)
Messenger RNA biogenesis [BR:
pmaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107215078 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
107215078
NCBI-ProteinID:
XP_015506525
Ensembl:
ENSPMJG00000017937
LinkDB
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Position
27:1101288..1112378
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AA seq
638 aa
AA seq
DB search
AAESECESEDGIEGDAVLSDYESAEDSEAEEEDYSEEESSKVELKQDSNDSCESAARGEK
GSEKADPKGAVTGERQSGDGQESTEPVEKKVGKKVPKHLDDDEDRKNPAYIPRKGLFFEH
DLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKTRQELIALYGYDIRSAHNPD
EIKPRRMRKPRFGSPPQRDPNWSNERPPKPPRHQGAKSPSAPPRSFNNRSSASTGRMPPA
RNYPRMGGYKETRPGYRASEATVPHRNGEQAKQESGYRGKRAEQSPSRDTSPELEMAHVH
GSPGKEEGALENQATAADAAQPPPDRPVEKKSYSRARRTRVKAGEAGKLAEEVPASEGLA
PAIPKPTPAETSPPPAKSNWESSVESSVDGLEQEMTQMNLTEQNWSPGQSQFIPPREMRG
IPNHVHVGTGPPPQFNRMEEMAVPGGRVKRYSSQRQRPPVPEPAPPMHISIVEGHYYDPL
QFQGPIYTHGENPAPLPPQGMIVQPEMHLPHPGLHAHQTPPAMANPGLYPPPVSMPPGQP
PPQQLLTPTYFSAPGVMNFGNPGYPYPPGALPPPPPPHLYSNTQAQSQVYGGVTYYNTVQ
QQVQPKPSPPRRTSQPVTIKPPPPEDSKGEKSKERSNT
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
gcggccgagtcggagtgtgaaagcgaggatggcatcgaaggagatgccgtgctctccgac
tatgaaagcgccgaggactcggaggcagaggaagaggattacagcgaggaagaaagctcc
aaggtggagctgaagcaggacagcaacgattcctgcgagtcggcagccagaggggagaag
gggagtgagaaggcggatcccaagggagcggtgacgggcgagcggcagagcggggacggg
caggagagcacggagcctgtggagaagaaagttgggaagaaggttcccaagcacctggac
gacgatgaggatcggaagaacccggcgtacatcccgcgcaaggggctcttctttgagcac
gacctccgagggcagacgcaggaggaggaggtcaggccaaagggtcgtcagcggaagctg
tggaaggacgaggggcgctgggaacacgacaagttccgtgaggatgagcaggcccccaag
accaggcaggagctgatcgcgctgtatggatatgacatccgctcagcccacaaccccgac
gagatcaaaccccgcaggatgcgcaaacctcggtttggcagtccccctcagcgagacccc
aactggtccaacgagaggccccccaagccccccaggcaccagggtgccaagagcccctca
gctcctccacggtccttcaacaaccgcagctctgccagcactggcaggatgccccctgcc
agaaactaccccaggatggggggctacaaggagacccgtccaggctaccgggcttcggag
gcgaccgtcccacaccggaacggggaacaagccaagcaggagagcggctaccgcgggaaa
cgtgcagagcagagcccgtcaagggacacgtcccctgagttggagatggcacatgtccac
ggcagccctgggaaggaggagggggctctggaaaaccaagccacggctgctgacgctgca
cagccgccaccagacagaccagtcgagaagaaatcttattcccgggcaagaaggaccaga
gtcaaggctggggaggcggggaagctggcggaggaagtgcctgcttccgaggggctggct
cccgcgattccgaaacccacgccggccgagacctcccccccgccagccaagagcaactgg
gagtcatcagtggaatccagcgtggatggacttgagcaggagatgacccagatgaacctg
acagagcagaactggagcccggggcagtcccagttcatcccgccccgggagatgaggggt
attcccaaccatgtgcacgtgggaactgggccaccaccgcagtttaaccggatggaggag
atggcagtgccggggggccgtgtgaagcgctactcatcgcagcggcagagaccccccgtg
cctgagcctgcgccccccatgcacatcagcatcgtggaagggcactactacgacccatta
caattccagggaccaatctacacccacggtgagaacccagccccgctgccgccccaaggg
atgattgtgcagccggagatgcacctccctcatccaggtttacacgcccaccagacgccc
cctgccatggcaaaccccggcctctaccccccaccagtgtccatgcccccgggccagccc
ccgccgcagcagctgctcactccgacttacttctccgcccctggagtgatgaatttcggg
aatcctggctacccctacccccctggagctctgccccctccgccccctcctcatctctat
tccaacacgcaggcgcagtcccaggtgtatgggggggtcacctactacaacactgtccag
cagcaggtgcagcccaagccctccccgccccgccggacgtcccagcctgtgaccatcaag
ccaccccctccagaggacagcaaaggtgaaaaatcaaaggagaggagcaacacgtag
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