Parus major (Great Tit): 107215177
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Entry
107215177 CDS
T04864
Symbol
DHX8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107215177 (DHX8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmaj03041
]
107215177 (DHX8)
Enzymes [BR:
pmaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107215177 (DHX8)
Spliceosome [BR:
pmaj03041
]
Complex C
Other components
Step II factors
107215177 (DHX8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
Flavi_DEAD
AAA_16
T2SSE
PhoH
TsaE
ABC_tran
Sigma54_activ_2
Cas3-like_C_2
Transformer
Spem1
Motif
Other DBs
NCBI-GeneID:
107215177
NCBI-ProteinID:
XP_015506665
Ensembl:
ENSPMJG00000002357
LinkDB
All DBs
Position
27:2025628..2040161
Genome browser
AA seq
1191 aa
AA seq
DB search
MAELAAAEELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKNTTFDTFKAILLK
NGAEFTDSLISNLLRLIQTMRPPPKPSSSKEAAVKPKSEKEKLRELYPALCRPDNPNIRN
MLDEDDVKVAADALKELEALMPSADKGKQRSSDHRVKKRKRSRSRSRDRKRRHRSRSRSR
SRTWDRNRGKSRYRSRSRSWSPSKDRKDRDKYLEKSHERWRDKHIDRPPAEEPSIGDIYN
GKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGS
KTSLSMKDVDQDTGEDLNPNRRRNLVGEINEETSMRNPDRPSHLSLVSAPEVEDDSLERK
RLTRISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPPFL
RGHTKQSMDMSPIKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGLNTHW
VDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSIIEQRESLPIFR
LKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKR
VSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHE
RTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYT
KEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELII
LPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKT
GIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTV
LSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPML
CKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVY
NSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAICS
GFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTID
PRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggcggagctggcggcggccgaggagctcgccaagctcgagtacctgtcgctggtctcc
aaggtctgcaccgagctcgacaaccacctgggcatcaacgacaaggacctggccgagttt
gtgataagtcttgccgagaaaaataccacgtttgacacatttaaagcaattcttctgaag
aatggtgctgagttcactgattccctcattagtaacttgctacgtctcatacagacaatg
cggcctccaccaaaaccatccagcagcaaagaggcagctgtcaaacccaaatcagagaaa
gagaagttgagggagttgtatccagccctttgcaggccagacaatcccaacatcaggaat
atgctggatgaagatgatgtgaaagtggcagctgatgccctgaaagaactcgaagctctg
atgcctagtgcagacaagggcaagcagaggagcagcgaccatcgagtgaagaaaaggaag
aggagccgaagtcgtagcagggacaggaagcgaaggcacagatctcggtccaggtctcgt
tccaggacttgggataggaacaggggaaaatccagataccggtcaaggagcagaagttgg
agtcccagtaaggaccgcaaggatcgagacaagtaccttgagaagagccatgagaggtgg
agagacaagcacatagaccgtccaccagctgaggagccttccatcggagacatctacaac
ggcaaagtcacgagcataatgcagtttgggtgctttgtgcagctggaaggactaaggaaa
cgttgggagggtttggttcacatctcagagctgcgaagagaaggacgggttgccaacgtt
gctgatgttgtgagcaaaggccaaagagtgaaagtcaaagtgttatcttttactggatcc
aaaaccagcctgagcatgaaggatgttgatcaagacaccggggaagacttgaacccaaac
cgtagaaggaacctggttggagaaatcaatgaggaaacatccatgaggaacccagacagg
cccagtcacttgtccctggtgagcgcccccgaggtggaggacgacagcctggaacggaaa
cgcctcacccgcatttcagaccccgagaagtgggaaataaaacagatgattgcagctaat
gtgctttccaaggaagagtttcctgacttcgatgaggagactgggattcttcctaaagtt
gatgatgaagaagatgaggatcttgagattgagctagttgaagaggagccaccatttctt
cgaggtcacaccaaacagagcatggatatgagtcccattaaaatagtaaagaatccagat
ggttccttgtcccaggctgcaatgatgcaaagtgctttagctaaagagaggcgagaactt
aaacaagcccagagagaagcagagatggattccatccccatgggcctcaacacacactgg
gtggatcctctccctgatgtggatggaagacaaatagctgcaaacatgcgaggtattggg
atgatgccaaatgatatcccagagtggaagaaacatgcatttggtggcaacaaagcttct
tatggtaagaagacacagctttccatcattgaacagagagagagtctcccaatcttcaga
ctgaaggagcagctgatacaagctgtgcatgacaaccagattctgattgttattggagag
acaggatctgggaaaacaacccagattacccaatacctggctgaggcaggatatacctca
agaggaaagattggatgtactcagcctcgcagagtggctgcaatgtctgtagcaaagaga
gtgtcagaagaatttggttgctgcttgggacaagaggttggctacaccattcggtttgaa
gactgcaccagccctgagactgtcatcaagtacatgacagatgggatgttactgagagag
tgcctgatagacccagatctgacccagtatgccattatcatgctggatgaggcccatgag
aggaccatacatacagatgtgctctttgggctcctgaagaagacagtccagaaaaggcag
gacatgaagttgatagtgacatcagcaacactggatgctgtgaaattctctcagtatttc
tatgaagcaccaatcttcacaattcctggcagaacatacccagtagaaattctgtacaca
aaagagccagagacagattatttggatgccagtctgattacagtaatgcagatccattta
acagagccaccaggtgatattttggtctttctaactggccaggaagagattgacactgcc
tgtgaaatcctctatgagaggatgaaatctctaggacctgatgttccagagttaattatc
ctgccagtatattcagctttgcccagtgaaatgcagaccaggatctttgacccagcccca
ccagggagcagaaaggttgtcattgccaccaacattgcagagacatctttgactattgat
ggaatatattatgtggttgatcctggctttgtgaagcagaaagtctataactccaagact
ggaattgaccagctggtggtgacaccaatttctcaggctcaagccaagcagcgtgcagga
agggctgggagaacaggcccaggaaaatgttacaggttatacacagaacgtgcatataga
gatgagatgttaaccaccaacgtgcctgaaatccagagaacaaatctggccagcacagtg
ctctccctgaaggctatgggcatcaatgatttgctgtcctttgactttatggatgctccc
cccatggaaactctgataactgccatggagcagctctacaccctgggagctctggatgat
gaggggctgctcactcgacttgggcgcaggatggcagaattccccttggagcctatgctg
tgtaagatgttgatcatgtctgtgcatctggggtgcagtgaggagatgctgaccattgtc
tccatgctgtctgtgcagaatgtgttctacaggccaaaggataagcaagcacttgctgat
caaaagaaagccaagttccatcaaacagaaggtgaccacctcacgctgctggctgtgtac
aattcctggaagaataataagttttcaaatccctggtgctatgaaaattttatccaggcc
cgatccttacgccgggcacaggacattcgcaagcagatgttgggcatcatggacaggcat
aagctggatgtggtgtcctgtgggaaggcaacagttcgggtccagaaggccatttgcagt
ggcttcttcagaaatgcagcaaagaaggatccccaggaagggtacaggacactcattgac
cagcaagttgtctacatccacccatccagtgctctcttcaacaggcagcctgagtgggtg
gtgtatcacgagctggtgctgaccaccaaggaatacatgcgggaggtgacaaccatcgat
cctcgctggctggtggagtttgccccagctttcttcaaggtctctgatccaaccaagctg
agcaagcagaagaagcagcagcggctggagcccctctacaaccgctacgaggagcccaac
gcctggaggatatcccgtgccttccggcggcgatga
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integrated database retrieval system
