Parus major (Great Tit): 107215576
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Entry
107215576 CDS
T04864
Symbol
PTBP1
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaj03019
]
107215576 (PTBP1)
03041 Spliceosome [BR:
pmaj03041
]
107215576 (PTBP1)
Messenger RNA biogenesis [BR:
pmaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
107215576 (PTBP1)
Spliceosome [BR:
pmaj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
107215576 (PTBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
107215576
NCBI-ProteinID:
XP_015507345
Ensembl:
ENSPMJG00000011055
LinkDB
All DBs
Position
28:3023318..3051146
Genome browser
AA seq
586 aa
AA seq
DB search
MDGIVQDITVGTKRAAEELFSPCVTTNGPFIMSSNSPSAANGNDSKKFKGDNRSAGIPSR
VIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEETANTMVNYYTTVTP
VLRSQPIYIQFSNHKELKTDNSPNQAVSLFSALSSQGGGTRSQRAQAALQAVTQVQAGAV
ALAATAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNHQF
QALLQYADPMSSQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPS
GDSQPTLDQTMAAAFGERSGSGSRTKPTGAPGIISPPYAGAGFPPTFAIPQATGLTVPSV
PGALAPLAIPAAAAAAAAGRIAIPGLSGTGHSVLLVSNLIPERVTPQCLFILFGVYGDVQ
RVKILFNKKDNALVQMADGNQAQLAMSHLNGQKLHGKPIRITLSKHQTVQLPRENQEDHG
LTKDFGTSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTEEDLKLLFSSNGGMVKGFK
FFQKDRKMALIQMGSVEEAIQSLIDLHNHDLGENHHLRVSFSKSTI
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggacggcattgtccaagatataacagttggtacaaagcgggcagctgaggagcttttc
tctccttgtgttactactaacggaccctttatcatgagcagcaactctccttctgcagct
aatggaaacgacagcaaaaagttcaaaggtgataacagaagtgccgggatcccatcccga
gtaatccacgtccgcaagctccccagtgacgtcacggaggcagaggttatttctttgggc
ttaccctttggcaaggtcaccaatcttctgatgttgaaaggaaaaaaccaggctttcata
gagatgaacacggaggagacagccaacaccatggtgaactactacaccacagtcactcca
gtgctccggagccagcccatctatatccagttctccaaccacaaggagctgaagacagac
aactctccaaaccaagcagtcagtttgttctctgcattgtcatcccagggaggggggaca
cgcagccagcgtgcccaagcagctctgcaagccgtgacccaggtgcaggctggggccgtg
gcgctggccgccacagccgcggccgtcgatgcagggatggcgatggctggccagagccct
gtcctgagaatcattgtggagaatctcttctaccctgtcactctagatgttctgcaccag
atcttttccaaatttggtacagtcttgaaaatcatcacattcacgaagaaccaccagttt
caggccttgttgcaatatgctgaccccatgagttctcagcatgccaagctgtctctggat
ggacagaacatctacaacgcctgctgcacgctgcgcatcgacttctccaagctcacaagt
ctcaatgtaaagtacaacaatgacaagagcagagactacacccgcccagatctgccctct
ggggacagccagcccaccctggaccagaccatggcagctgcttttggtgagcgttcagga
agtgggagcaggacaaagccaactggtgccccaggaataatctctcctccatatgctgga
gctggctttcctcctacttttgccattcctcaggctacaggcctgacagttccaagtgtt
cctggagcactagctcctttggctattccagcagcagctgcagcggctgcagcaggacgg
attgccattcccggcctgtctgggacagggcactccgtgctgctggttagcaatctgatc
ccagagagagttacaccccaatgcctctttattcttttcggagtctatggtgatgtgcag
agggtgaagattttatttaataagaaagataatgccctggttcagatggctgatggaaat
caggcccagcttgccatgagccacttgaatgggcagaagctccacgggaagcccatccgt
atcacactgtccaagcaccagacagtgcagctgccccgtgagaaccaggaggaccacggc
ctgaccaaggactttgggacttctcctctacatcgtttcaagaaaccaggctccaaaaat
ttccaaaacatctttcccccttctgccactcttcatctgtccaatattccaccttcagta
actgaagaagaccttaagttgttattttcaagcaatggtgggatggtcaaaggattcaaa
ttcttccagaaggaccgtaaaatggctctgatccagatgggctctgtggaagaagccatt
cagtccctcattgacctccacaatcatgaccttggggagaaccatcacctgcgtgtgtcc
ttctccaagtccaccatttag
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