Parus major (Great Tit): 107216075
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Entry
107216075 CDS
T04864
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pmaj
Parus major (Great Tit)
Pathway
pmaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107216075 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaj03019
]
107216075 (MTREX)
03041 Spliceosome [BR:
pmaj03041
]
107216075 (MTREX)
03009 Ribosome biogenesis [BR:
pmaj03009
]
107216075 (MTREX)
03016 Transfer RNA biogenesis [BR:
pmaj03016
]
107216075 (MTREX)
Enzymes [BR:
pmaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107216075 (MTREX)
Messenger RNA biogenesis [BR:
pmaj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107216075 (MTREX)
Spliceosome [BR:
pmaj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107216075 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
107216075 (MTREX)
Ribosome biogenesis [BR:
pmaj03009
]
Eukaryotic type
Pre-60S particles
Helicases
107216075 (MTREX)
Transfer RNA biogenesis [BR:
pmaj03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107216075 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Helicase_dom4_arc
AAA_22
Motif
Other DBs
NCBI-GeneID:
107216075
NCBI-ProteinID:
XP_015508061
Ensembl:
ENSPMJG00000015902
LinkDB
All DBs
Position
Z:16512347..16555183
Genome browser
AA seq
1034 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAAAASVAKKNKTGPAEGARRPGKRLEEKPSVPAIVKPKRELEI
DSTENVILGKKPKLEDVLSEDVNLTDLMPQVKVQSVETVEGCTHEVALPANEEFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGDD
YGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCTKDSLKNSATESAKPARPDERGEMQV
VPVLVHLVSAISSVRLYIPKDLRPIDNRQSVLKSVQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKIEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAMDIKVAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLETDEENYLNSFKPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcctttggggatgagctcttcagcgtgttcgaagaggatgcggccgccgcc
gcttctgtcgccaagaagaacaaaacgggccccgccgagggtgccaggaggccgggaaaa
cgattggaagaaaaaccttcagtaccagcaatagtcaagccaaaaagggaacttgagatt
gatagtactgaaaatgtcattttagggaaaaaaccaaaattggaagatgttttatctgaa
gatgttaatctgacagatctgatgcctcaagtaaaggtgcaatctgttgaaactgttgaa
ggttgtacacatgaggttgcgcttccagcaaatgaagaattcacaggtctgaagccaaga
actggaaaagctgcaaaagaatatccatttattcttgatgccttccagagagaagctatt
ctttgtgtagataataaccagtctgtgttagtgtcagctcacacatcagcgggcaaaact
gtttgtgctgagtatgcaattgccctggctttgagggaaaagcagcgtgtgatatttaca
agtccaattaaagctttaagtaatcagaagtaccgtgagatgtatgaagagtttcaggat
gttggtttgatgactggggatgtcaccattaaccctacagcttcttgtttggtaatgaca
actgagatcttgagaagtatgctttacagaggttctgaagttatgcgtgaagttgcttgg
gttatatttgatgaaattcactacatgagagatacagagcgtggtgtggtttgggaagag
actattattttgcttcctgataacgtacattacgtgttcctttctgcaactattccaaat
gctcgtcaatttgctgaatggatctgccatcttcacaaacagccttgccacgtgatttac
actgactatcgacccactccactgcagcattatatatttccagcaggaggagatggactc
catctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatgcag
gtgcttagagatgcaggagacttagcaaaaggcgatcagaaaggcagaaaaggaggaaca
aaaggtccttcaaatgtttttaagattgtgaagatgataatggaaaggaatttccaacct
gtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaaa
ttagatttcaatacagatgaagaaaaaaaaatggttgaagaagtcttcaataatgcaatt
gactgtctctcagatgaagacaaaaagcttcctcaggtcgaacacgtgcttccccttctg
aagcgaggaattggtattcatcatggtggtttgcttcctatcttaaaagaaaccatagaa
atacttttctcagagggactaataaaggccttatttgcaacagagactttcgctatggga
attaatatgccagccagaactgtgctgtttacaagtgccagtaaatttgatgggaaagat
ttccgatggatatcctcaggtgaatacattcaaatgtcaggccgcgcaggacgccgaggt
atggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaattggc
aagcagcttttgaagggttcagctgatccattaaatagtgcattccacctgacatacaac
atggtattgaacttacttcgagtagaagaaattaatcctgaatacatgttagaaaaatca
ttttatcaattccagcattacagaactattccagaaatagtggaaagagtcaacaatttg
gaagcacagtacaacaaaattgtaattcccaatgaagaaaatgtggtgatatactacaga
atccgccagcagcttgcaaaactgggtaaagatattgaagagtatattcacaaaccaaag
tactgcttgccctttctacagccaggaagactggtaaaggtgaagaatgaaggtgatgac
tacggatggggagtggttgttaatttctctaagaaatcaaatgttaagccgaattctggt
gaattggacccattgtatgtagttgaagtgctcctgcactgcaccaaagacagtttgaaa
aactctgctactgagtctgcaaagccagccagacctgatgagagaggagagatgcaggtt
gttcctgttttggtgcatcttgtctcagctatcagcagtgtccgcctctacataccgaaa
gacctgaggccgattgataacaggcaaagtgtgttaaaatctgtacaagaagtacagaaa
cgatttcctgatggagtacccttactagaccctattgatgacatgggcatcaaagaccaa
gggttgaaaaaagtaatccaaaaaatagaagcatttgagcataggatgtattcacatcct
cttcacaatgatccaaacttggaaaccatatacaaactttgtgaaaaaaaagcgcagatt
gctatggatattaaagtagcaaagcgagaattgaagaaagccagaactgttctgcaaatg
gatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacgtcttcagat
gttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactcctg
acagaaatgatgttcaatggcctcttcaatgacttgtctgcagagcaggcaactgcacta
ctcagctgttttgtgtttcaagagaattccagtgaaatgccaaagttgactgagcagttg
gcaggaccacttcggcaaatgcaggagtgtgcaaaaagaattgccaaggtgtcagcagaa
gcaaaactggaaactgatgaagaaaattacttgaattctttcaaacccaacctaatggat
gttgtgtatacatgggcaaatggagctaactttgcacacatctgcaaaatgactgatgtc
tttgaaggtagcataattcggtgcatgaggcgtctagaggaactgcttcggcagatgtgc
caggctgcaaaagccattgggaacacagaactggaaaataagtttgcagaggggattaca
aaaatcaagagagatattgtgtttgctgcaagcctttatctgtaa
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