Pseudomonas marincola: PMYSY11_2756
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Entry
PMYSY11_2756 CDS
T07318
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmao
Pseudomonas marincola
Pathway
pmao03030
DNA replication
pmao03410
Base excision repair
pmao03420
Nucleotide excision repair
pmao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PMYSY11_2756 (ligA)
03410 Base excision repair
PMYSY11_2756 (ligA)
03420 Nucleotide excision repair
PMYSY11_2756 (ligA)
03430 Mismatch repair
PMYSY11_2756 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmao03032
]
PMYSY11_2756 (ligA)
03400 DNA repair and recombination proteins [BR:
pmao03400
]
PMYSY11_2756 (ligA)
Enzymes [BR:
pmao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PMYSY11_2756 (ligA)
DNA replication proteins [BR:
pmao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PMYSY11_2756 (ligA)
DNA repair and recombination proteins [BR:
pmao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PMYSY11_2756 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PMYSY11_2756 (ligA)
MMR (mismatch excision repair)
DNA ligase
PMYSY11_2756 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PMYSY11_2756 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Bep_C_terminal
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
CAE6925947
LinkDB
All DBs
Position
PMYSY11:complement(2864275..2866638)
Genome browser
AA seq
787 aa
AA seq
DB search
MSEVAQRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFKELKQLETDNPHLITPDSPTQ
RVGSLALTAFDEVKHEVPMLSLGNAFEEADMLSFDRRVREGLDLPSGDLFGGGAEVEYSC
EPKLDGLAVSLLYRDGLLVRGATRGDGSTGEDISVNVRTIRNVPLKLQGEGWPAVLEVRG
EVFMSKAGFEALNERQLALGGKTFANPRNAAAGSLRQLDSKITAARPLEFCCYGIGQVEG
ELPQTHIGILQTLKDWGMPISRELKLAKGIDQCLAYYRDIGERRESLAYEIDGVVFKVNS
LASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
SNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVTERRPADARAVSIPENCPVCGS
HVERTQLVKRSKGKESFVEGSIYRCVGRLACAAQLKQAIIHFVSRRAMDIEGLGEKSVEQ
LVDEGLVRSPADLYTLTFDQVVQLEGFAELSSKNLLAAIADSRKPTLARFIYALGIPDVG
EETAKLLARALGSLERIQQALPEVLTYLPDVGLEVAHEIHSFFIDPHNRQVIADLLERGL
QLQEEGELHPEFAACTTLAGFIDKLNIASIAATGAERLAARFQSLEGIIQADWLDLRQVE
RLNEKAARSLRDFFDDPANAERALAIEAQLRDFGMHWQSEKKQVEGLPLAGQTWVLTGSL
EIMSRDVAKEKLEGLGAKVAGSVSAKTTCVVAGPGAGSKLAKATELGVAVLDEAQFIQRL
AGYGIEV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagttgcccagcgcattcttgaacttcgtgccgaacttgatcagcacaattac
cgctaccacgtacttgatgagccgagcattccggatgccgagtacgaccgtctgttcaaa
gagttgaagcaacttgaaaccgataacccgcacctgattaccccggactcgcccacgcag
cgagtcggcagcctggcgctgacagcctttgacgaagtcaaacacgaagtgccaatgctc
agcctcggcaacgccttcgaagaagcggacatgctcagtttcgacaggcgtgtgcgtgaa
gggctggatttgccctccggtgatttgttcggtggcggcgcggaggttgaatacagctgc
gagcccaagctcgacggtttggcagtgagcttgttgtaccgcgacggcctgctggtgcgc
ggcgctacgcgtggcgacggcagcacgggtgaagacatcagcgtcaatgtgcgtaccatc
cggaatgtgccgttaaagttgcagggcgagggctggcctgcggtgcttgaagtgcgcggc
gaagtgtttatgtccaaggccggttttgaggcgcttaacgagcgccaactcgcgctgggc
ggcaagacatttgccaacccccgtaatgcggcggctggcagcttgcgccagctcgactcc
aagattaccgccgcgcgtccgctggaattctgctgctacggcatcgggcaggttgagggc
gagctgccacaaacccatatcggcattttgcagacgctcaaagactggggcatgccgatc
agccgcgagctgaaactggccaagggcatcgatcagtgcctcgcctattaccgggacatt
ggcgagcgccgcgagtcattggcgtatgagatagacggcgtggtgttcaaggttaacagc
ctggccagtcagcgcgagctgggattccgggcgcgtgaaccacgttgggcgattgcccat
aagttcccggcaatggaagagctgaccgagcttttggatgttgagtttcaggttggccgc
acgggagcagtcaccccggttgcgcgcctcaagccggtgaaagtggcgggcgttacggtg
tccaacgccacgctgcacaatatggatgaagtggcgcgtctgggattgatgatcggcgat
actgtgatcatccgccgcgccggcgatgtaatcccgcaagtggttcaggtggtgactgag
cgtcgccccgccgatgcgcgtgcggtgagcatccccgagaattgtccggtgtgcggctcg
catgtcgagcgcacccaactggtcaagcgcagcaagggcaaggaatcgtttgtcgaaggt
tcgatctatcgctgcgtcggccgtctggcctgcgcggcccagctcaagcaggcgattatt
catttcgtctcgcgccgtgccatggatattgaagggctgggcgagaagagcgtcgagcaa
ctggtcgatgaagggctggtgcgctcgcccgctgatctctacacattgacattcgatcag
gtggtgcagcttgaggggtttgccgagctgtcgagcaagaatctgctcgcagcaattgcc
gacagccgcaagccgacgctggcacgctttatctatgcgctgggtattcctgatgtaggc
gaggagaccgccaagctgctggcgcgtgcgctgggctcgcttgagcgcattcagcaggcg
ttgccggaagtgctgacttatctgcctgatgtcgggctggaagtggcgcacgaaatacac
agcttctttattgatccgcataaccgtcaggtaattgccgatttgctcgagcgcggcctg
caattgcaggaagagggcgagttgcatcctgaatttgctgcctgcaccacgctcgccggc
tttatcgacaagctcaatattgcctccatcgcggcaaccggcgctgaaaggctggctgct
cgtttccagtcacttgaggggattatccaggctgactggctggatttgcgccaagtcgaa
cgcctgaacgagaaggctgcacgctcgctgcgtgatttcttcgatgatccggcgaatgct
gagcgggcactggcgattgaggcgcaactgcgtgatttcggcatgcactggcaaagtgag
aagaagcaggtcgagggtttacctctagccgggcaaacctgggtactgaccggcagcctg
gaaatcatgagccgcgatgtggccaaggaaaagctcgaagggctgggcgccaaggtggcc
ggttcagtgtctgccaaaaccacttgcgtggtagcagggccgggggcgggctccaagctg
gcaaaggcaactgagctaggcgtggccgtgctggacgaggcgcagtttattcagcgcttg
gcaggttacggtatcgaggtttaa
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integrated database retrieval system
