Pelagerythrobacter marinus: NCF86_08570
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Entry
NCF86_08570 CDS
T08297
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmas
Pelagerythrobacter marinus
Pathway
pmas03030
DNA replication
pmas03410
Base excision repair
pmas03420
Nucleotide excision repair
pmas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCF86_08570 (ligA)
03410 Base excision repair
NCF86_08570 (ligA)
03420 Nucleotide excision repair
NCF86_08570 (ligA)
03430 Mismatch repair
NCF86_08570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmas03032
]
NCF86_08570 (ligA)
03400 DNA repair and recombination proteins [BR:
pmas03400
]
NCF86_08570 (ligA)
Enzymes [BR:
pmas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCF86_08570 (ligA)
DNA replication proteins [BR:
pmas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCF86_08570 (ligA)
DNA repair and recombination proteins [BR:
pmas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCF86_08570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCF86_08570 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCF86_08570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCF86_08570 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
DNA_ligase_ZBD
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
USA38389
LinkDB
All DBs
Position
complement(1699184..1701346)
Genome browser
AA seq
720 aa
AA seq
DB search
MSEMTEAEAANELMRLAKQIARHDRLYHAEDAPEITDQEYDALVRRNAELEAQFPHLVRS
DSPSRAVGHAVAASPLSKVTHEVRMMSLDNAFADEEVADFVARVRRFLALGEDEPVAFTA
EDKIDGLSCSLRYENGVLVRAATRGDGQVGEDVTANVAHIPDIPAELTGDVPEVFEVRGE
VYMEREAFVALNARLMEEARNAAEAKGEAFDPAKVRQFANPRNAAAGSLRQKDASVTASR
PLRFWAHGWGAASAVPGETQFAVMQRIGEWGLPISPDLVRCETLEAMLAHYRAIGEGRGA
LGYEIDGVVYKVDRLDWQERLGFVAKAPRWALAHKFPAEQAETTLEAIDIQVGRTGKLTP
VGRLAPVLVGGVTVTNVTLHNRDEIARLGVRPGDRIKVQRAGDVIPQVVENLTRDAQRDP
YCFPGHCPECGSEAVAEEGEVDVRCTGGLVCPAQRTERLKHFVSRGALDIEGLGEKTIDQ
FFALGWLESPADIFRLKHRREAILALEGWKDKSVENLLASIEAKRAPDAARLLFGLGIRH
VGAVTARDLMKGLGEIARLPDKAAQIHAYREENPRGEDESEGKFNARMVEAIKDILEVRA
DGIGTAVGFALADFFHEKHNRAVFDDLLRELDPPRYEVETKESSVSGKTVVFTGKLETMS
RDEAKAQAERLGAKAAGTVSAKTDLLVAGPGAGSKLKKAAELGVEVIDEAQWAQIVAEAG
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagatgaccgaagccgaggccgccaacgagctgatgcggctggcgaagcagatc
gcgcggcacgaccggctctaccacgccgaggacgcgcccgagatcaccgaccaggaatac
gacgcgctcgtgcgccgcaatgcggagctggaggcgcagtttccccatctcgtccgctcc
gattcgccgtcgcgcgcggtcggccacgcggtcgccgcctcgccgctgtccaaggtcacg
cacgaggttcggatgatgagcctcgacaatgccttcgccgacgaggaagtggccgatttc
gtcgcccgcgtgcggcgcttcctggcactgggcgaggacgagccggttgccttcaccgcc
gaggacaagatcgacgggctatcgtgctcgctgcgctacgagaacggcgtcctcgtgcgc
gcggcaacgcgcggcgacgggcaggtgggcgaggacgtgaccgcaaacgtcgcccatatc
cccgacattccggccgagttgaccggcgacgtgcccgaggtgttcgaggtgcgcggcgaa
gtctacatggagcgcgaggccttcgtggcgctcaacgcccgcctgatggaggaagcgcgc
aacgcggccgaggcgaagggcgaggctttcgatcccgccaaagtgcgccagttcgccaac
ccgcgcaacgcggcggcgggctcgctgcggcagaaggacgccagcgtcaccgccagccgc
ccgctgcggttctgggcccacggctggggcgcggccagcgcggtgccgggcgagacgcag
ttcgccgtgatgcagcggatcggcgaatggggcctgccgatcagccccgacctcgtccgg
tgcgagacgctggaggcgatgcttgcccattaccgcgcgatcggtgaggggcgcggcgcg
ctcggctacgagatcgacggcgtcgtctacaaggtggaccggctcgactggcaagaacgg
ctcggcttcgtcgccaaggcgccgcgctgggcgctcgcgcacaagttcccggccgaacag
gccgaaaccacgctggaggcgatcgacatccaggtcgggcgcaccggcaagctgacgccg
gtgggccgcctcgcgcccgtgctcgtcggcggggtgacggtgaccaatgtcacgctgcac
aaccgcgatgaaatcgcgcgcctcggcgtgcgaccgggcgaccggatcaaggtccagcgt
gccggcgacgtgattccgcaagtggtcgagaacctgacccgcgatgcacagcgcgatccc
tattgcttccccggccactgccccgaatgcggcagcgaggccgtggcggaggagggcgaa
gtcgatgtccgctgcaccggcggcctcgtctgcccggcgcagcggaccgagcggctcaag
cacttcgtcagccgcggcgcgctcgatatcgaagggctgggcgagaagacgatcgaccag
ttcttcgcgctcggctggctcgaaagtccggcagacatcttccgcctgaagcaccggcgc
gaggcgatcctggcgctggaagggtggaaggacaagtcggtcgagaacctgctggcgagc
atcgaggccaagcgcgcgcccgacgcggcgcggctgctgttcggcctcggcatccgccac
gtcggcgcggtcaccgcgcgcgacctgatgaaggggctgggcgagatcgcccgcctgccg
gacaaggcggcgcagatccacgcctaccgcgaggaaaacccgcgcggcgaggacgagtcc
gaaggcaagttcaacgcgcgcatggtcgaggcgatcaaggacatcctcgaagtccgcgcc
gacgggatcgggaccgccgtcggcttcgcgctggccgatttcttccacgagaagcacaac
cgcgcggtgttcgacgatctgctgcgcgaactcgatcccccgcgctacgaggtcgagacg
aaggaaagctccgtctcgggcaagacggtggtcttcaccggcaagctggaaacgatgagc
cgcgacgaggccaaggcccaggccgagcggctcggcgccaaggccgccggcacggtcagc
gcgaagaccgacctcctcgtcgcgggccccggcgcgggcagcaagctgaagaaggcggcc
gaactgggggtcgaggtgatcgacgaggcccagtgggcgcagatcgtcgcggaggcgggg
tag
DBGET
integrated database retrieval system
