Planococcus maritimus: BBI11_05565
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Entry
BBI11_05565 CDS
T06704
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmat
Planococcus maritimus
Pathway
pmat03030
DNA replication
pmat03410
Base excision repair
pmat03420
Nucleotide excision repair
pmat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBI11_05565 (ligA)
03410 Base excision repair
BBI11_05565 (ligA)
03420 Nucleotide excision repair
BBI11_05565 (ligA)
03430 Mismatch repair
BBI11_05565 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmat03032
]
BBI11_05565 (ligA)
03400 DNA repair and recombination proteins [BR:
pmat03400
]
BBI11_05565 (ligA)
Enzymes [BR:
pmat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BBI11_05565 (ligA)
DNA replication proteins [BR:
pmat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BBI11_05565 (ligA)
DNA repair and recombination proteins [BR:
pmat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BBI11_05565 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBI11_05565 (ligA)
MMR (mismatch excision repair)
DNA ligase
BBI11_05565 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BBI11_05565 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
zf-NADH-PPase
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ANU16552
UniProt:
A0A1C7DYS4
LinkDB
All DBs
Position
953362..955368
Genome browser
AA seq
668 aa
AA seq
DB search
MDRIKAEERVTELNELLRDYGHAYYVLDKPSVPDAVYDQLLNELIELETLYPDLIFPDSP
TQRVGGTPLSNFEKVRHERPMLSLSNVFNEEDLRDFDKRVRGGAGDSVEYVCELKIDGLA
VSLHYEDGKFVRGLTRGDGRVGEDITVNLRTVRSIPLKLKEPVSIEVRGEVFMPKKSFHA
LNTDREERGEELFANPRNAAAGSLRQLDSKIAAKRNLDVFIYGIGGDGETYGLNEHDESL
RYLTELGFKTNGERKVCRSVEEVLAYIEQWTDARNQLSYEIDGIVIKVNRFLHQQDLGFT
AKSPKWATAYKFPAEEVMTTVRDIELSIGRTGVVTPTAILEPVAVAGTTVQRASLHNEDL
IRERDIRINDKVIIRKAGDIIPEVVKALIEMRSGDEQPFEMPTECPACASELVRIEGEVA
LRCVNPKCPAQIVEGMIHFVSRNAMNIDGLGEKVIEQLYREGLIQDISDLYALTKEQLLE
LERMGEKSASNLIEAIDASKSNSMERLLFGLGIRHVGERGARILSEHFGSMDQLMQASLE
ELIEIHEIGDKMADAVVTYFEKEEVASLVERLRERGVNLFYTGTIVRVEEGANAFAGKKI
VLTGKLESLTRQEAGARIEALGGKLTGSVSKKTDLLIAGEEAGSKLDKAQDLGVEVWNEE
RLLMELNE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcattaaagctgaagaacgtgtaaccgaattgaatgaattgctccgcgactat
gggcatgcttattatgtgctcgacaaaccgagtgtgccagatgctgtgtacgatcaatta
cttaacgaattgattgaactagaaaccctataccctgatttgatattcccggattcgccc
acacagcgggttggcgggacgcctttatcgaatttcgagaaagtccgccatgagcggccg
atgctcagtttgtcgaacgtcttcaatgaagaagatttgcgtgatttcgataaacgcgtg
cgcggaggcgccggagactctgtggaatatgtatgcgaattgaaaattgacggtttggcg
gtgtcacttcattacgaagacggcaaattcgtgcgtggtttgacgcgcggggatggccgc
gtcggggaagacatcacggtcaatttacgcacagtgcgttcgattccgcttaaactgaaa
gaacccgtgtcgatcgaagtacgcggcgaagtgttcatgccgaaaaaatcgttccatgca
ctgaacacggatcgcgaagagcggggcgaggaattattcgccaatccgcggaacgctgcg
gccggttcgttgcgccaattggattcgaaaatcgctgccaagcgcaatctagatgtgttc
atctatggcatcgggggcgacggtgaaacttacggcttgaacgaacatgatgagtcgctt
cgctatttgacggaacttggctttaaaacgaatggcgagcggaaagtgtgccgctcggtt
gaagaagtgctggcatacatcgaacaatggacggatgcgcgcaatcaattgagttacgaa
atcgacggcatcgtcatcaaagtcaatcgctttctccaccagcaagatctcggcttcacg
gccaaaagcccgaaatgggcaactgcttataaattcccggcagaagaagtgatgacgacg
gtgcgcgatatcgagctgagcatcggccgtaccggcgtcgtcacaccaacggcgattctg
gagccagtcgctgttgccggaacgaccgtgcaacgtgcatctctccataacgaagacttg
attcgtgagcgcgacatccgcatcaatgataaggtcattattcgaaaagccggcgacatc
attccggaagtcgtcaaagcgctgatcgaaatgcggtcgggggatgaacagccgtttgaa
atgccgactgaatgtccggcatgcgcaagcgaactggtgcgcattgaaggggaagtggca
ctgcgctgcgtcaacccgaaatgtccggcacaaatcgtcgaaggcatgatccatttcgtg
tcacgcaacgcaatgaatatagacggacttggcgagaaagtcatcgagcaactgtaccgt
gaagggctgatccaagatatttcggatctctacgctttgaccaaagagcagttgctcgaa
ctcgaacgcatgggcgagaaatctgccagcaacctaattgaggcgatagacgcgtctaag
agcaattcgatggaacgtttgttgtttggccttggcatacgccatgtcggcgaacggggc
gcacgcattttatcggaacatttcggctcgatggatcagttgatgcaggcaagcttggaa
gaattgattgagattcatgaaattggcgacaaaatggctgatgccgttgttacttatttt
gaaaaggaagaagttgcgtcacttgtggaacgtttgcgtgagcgcggcgtcaatttattt
tatacaggcacgatcgtccgcgtcgaagaaggcgccaatgcgtttgccggcaagaaaatt
gtcctgaccgggaagctggaaagcctcacccgtcaggaagccggcgcacggattgaagcg
ctcggtggtaaattgaccggcagcgtcagtaagaaaaccgatttactgattgccggcgag
gaagccggttccaagctcgacaaggcacaggatctcggcgtggaagtgtggaacgaagaa
cgcctgcttatggaattgaacgaataa
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integrated database retrieval system
