Peromyscus maniculatus bairdii (prairie deer mouse): 102928868
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Entry
102928868 CDS
T11302
Symbol
Smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pmav03036
]
102928868 (Smchd1)
03400 DNA repair and recombination proteins [BR:
pmav03400
]
102928868 (Smchd1)
Chromosome and associated proteins [BR:
pmav03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
102928868 (Smchd1)
DNA repair and recombination proteins [BR:
pmav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
102928868 (Smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_2nd
Ig_SMCHD1_7th
Ig_SMCHD1_6th
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
102928868
NCBI-ProteinID:
XP_006972311
Ensembl:
ENSPEMG00000010741
UniProt:
A0A6I9KWI4
LinkDB
All DBs
Position
13:complement(29350493..29489591)
Genome browser
AA seq
2006 aa
AA seq
DB search
MAAKGASDAGGLSAGSGRDGGVDGCRTVYLFDRRGKDSELGERSLQVSERADYAGFRASV
SQTIGISSEETFVITTTSRKEITCDNFDDIVKDGVTLYLLQSVDQSLLTATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATARNVGVRRIQIKLLFDETQGKPAV
AVVDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPADSVHITN
DDERFLHSLIVEEKEKDSFTTVVITGVQPEHIQYLKNYFHLWTRQLTHIYHYYIHGPKGN
EINTAKEVGPSSNIDIEISLFEKGKTPKIVNLKEIKDDMQTLYINTASDSFEFKAHVEGD
GVVEGVIRYHPFLYDRETYPDDPCFPSKLRDEEDDDDCFILDKAARGKRPIFECFWNGRL
IPYTSVEDFDWCAPPKKRGLAPIECFNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYS
AIEWDGKIYKAGQLVKTVKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE
IKTVPIAKLDRTVAEKTIKKYVEDEMAKLPDRLSVTWPEGDELLPNEIRPAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHTSSGNKEIISHISQHGGKWPYWFKKME
NIQKLGNYTLKLQVVLNESNADTYAGRSLPSKAIKFSVKEGKPEKFSFGLLDSPFRVGVP
FNIPLELQDEFGHATQLLSDIQPVLEASGLSLHYEEITKGPNCVIQGVVAKGPVNSCQGK
NFNLKVVLPGLKEDSQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVVDESDNI
TAQPKLIVHCKFLGAPSLPVYTVDCSSSGTSILTGPAIQVQNIKKDQTLTARIEIPSCKD
VSPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMQNLIFQMYDEGERE
INITPSLAEKIKVNWTPEVNKEHLLQGLLPDVQVPTSVKDVRYCQVSFQDDHVSLESAFT
IRPLPDDPKHLKCELKGGKTVQMGQELQGEIVVIVADQYGNQIPAFSPDSLSTLSIAGVG
LDNSNLKITFEANTQSISVRGIRFTPGPPGHKDLCFTWREFSDFIRVHLVSGPPTKLLLI
DWPELKEPLPVINGRQLQNPLIVQLCDQWDNHALVSHVKISLIKVNSLRLLPSNQQHKTD
DKGRANLGVFTVFAPRGVHTVQVKGVYNKSTIEGPTIKFMILPDPEKPIRLNVKYDKDAS
FIAGGIFTDFMVSVISEGGNVIKNINPTRISMKMWKLSSGVSRPPTNAETFSCNKIKDND
KEDGCFYFREKTIPNKVGAYCIQFDFMIDKTNMLNSEQVIIDVLPNEPMKLVPDIQPATP
AVSNVRSIASRTLVKDLHLSITDNYGNHTGMNLIGTVVATIKGFNEEDTDTPLFIGKVRT
LEFPFVNGSAEITTLVLAENSPGRDSTEYFIIFEPRLSTLSRTLEPYSLPFMFYDDVKKQ
QQMAALTKEKDQLSKSIVMYRSLFDANKQLVDEMKCQVEEAKLKEVQLRNELKSHNIDIP
TTQQIPHIEALLEKKITEQNELKKKPRRSCTLPNYTKRSGDVLGKIAHLAQIEDDRAAMV
ISWHLASDMDCVVTLTTDAARSIYDETQGRQQVLPLDSIYRKTLPDWKRPLPHYRNGKLH
FKPFGDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRREVVKITHCPTLL
TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCVILGKEIDLIQQYRTAVCKLS
SVNKDLTNQLQYLHTPDMKKKKQELDEQEKSLKLIEQKLGMTPTRKCSDSFCHSAKIELT
ECPIPAKRMRRESTRQNRRPKGDVPN
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgaagggcgccagcgatgccggcggcctctcggcggggtctgggagggacggc
ggcgtcgacggctgtcggacggtgtacttgtttgaccggcgcgggaaggactcggagctc
ggggaacgctcgctgcaggtctcggagcgcgcggactacgcggggttccgcgcttcggtg
tctcagacaattggcatttcatctgaagaaacatttgttattacaactacaagcaggaaa
gaaatcacctgtgataattttgatgacattgttaaagatggagtcactctatacctgcta
cagtcagttgaccaatcactgttaacagcgacaaaagaaagaatcgacttcttacctcac
tatgacaccctggttaaaagtggcatgtatgagtattatgcaagtgaaggacagaatcct
ttgccatttgctcttgcagaattaatcgacaattcattgtcagcaactgctcgtaatgtt
ggtgttaggagaatacagatcaaattgctttttgatgaaacacaaggaaaacctgctgtc
gcagtggttgataatggaagaggaatgacctctaaacagcttaacaactgggctgtgtat
aggttgtcaaaatttacaagacaaggtgactttgaaagtgatcattcaggctatgttcgg
ccagtaccagtaccacgcagtttgaacagtgatatttcctattttggtgttggaggcaaa
caggctgttttctttgttgggcaatcagccagaatgataagcaaacctgcagactcccag
gatgttcatgagcttgtgctttctaaagaagattttgagaaaaaggaaaaaaataaagag
gcaatatatagtggatacattagaaacagaaagccagctgattctgttcacattacaaat
gatgatgaaagattcctacacagtcttattgtggaggagaaagagaaagacagctttact
actgtggttattacaggagtgcaaccagaacacatacagtacttgaaaaattatttccat
ctttggacacgacagttaacgcatatttatcattactatattcatggaccaaaaggaaat
gaaataaatacagctaaagaagttggaccttccagtaatattgatattgaaatttctttg
tttgaaaaaggaaagacacctaagattgtcaacctaaaggaaataaaggacgacatgcag
acattgtacataaacacagcatctgacagttttgagttcaaggctcacgtggaaggagat
ggtgtggttgaaggggttatccggtatcaccccttcttatatgatagagaaacgtaccct
gatgatccgtgctttccatcaaaattaagagatgaagaagatgatgatgattgcttcatt
cttgataaagcagcgagagggaagagacctatttttgagtgcttttggaatggacggtta
ataccatatacatcagttgaagactttgactggtgtgctcctcctaagaagagagggctt
gccccaattgagtgctttaatagaatatctggtgcattattcactaatgacaaatttcag
gtcagcacaaataaactgacatttatggatcttgagctgaaattgaaagataagaacacc
ctttttacacgaattttaaatggacaggagcagagaatgaagattgacagagaatttgct
ttatggctgaaggactgtcatgaaaagtatgacaaacaaataaaatttacactttttaaa
ggagtaattacccgtccagatcttccctctaaaaagcaaggcccctgggcgacatactca
gcaatagagtgggatggaaaaatatacaaagcaggacaactggtcaagacagtcaagaca
cttcctctcttttatggaagcatagtaagatttttcctttatggtgatcatgatggagaa
gtatatgctacaggaggtgaagttcagattgcaatggaaccccaggcgctgtatgatgaa
ataaaaactgtacccattgcaaagctggataggacagttgccgagaaaacaattaaaaaa
tatgtagaagatgaaatggcaaagctccctgatagattgtctgtaacttggcctgaagga
gatgaattattgccaaatgaaattaggcctgccggaaccccaattggtgcactacggatc
gaaatactaaacaagaagggggaagcaatgcagaagctcccagggacaagtcacggaggg
tcaaagaagctgctggtggaacttaaagttatactgcacacttcaagtggaaataaagaa
atcatttcacatatcagtcaacatggaggaaaatggccttactggtttaaaaaaatggaa
aacatccagaaactgggtaattatacattaaaattacaagtggtattaaatgaaagtaat
gcggacacctatgcaggaagatcactaccatctaaagcaataaaattttctgttaaagag
ggcaagccagaaaagttttcatttggtcttcttgattccccttttcgtgttggagttcca
ttcaatattcctttggagttacaggatgaattcggtcatgctacccaactgttatctgat
attcaaccagttcttgaagcaagtggtctgtctttacattatgaagaaataaccaaaggc
ccaaattgtgtaattcaaggtgttgtagctaagggtccagttaactcttgtcaaggcaag
aattttaatctgaaggttgttcttccgggtttaaaagaagattcacagattttgaaaatt
agattgctacctggtcctcctcatcgactaaaagtgaaacctgactcggaaattctagtt
atagagaatggaacagccttcccttttcaggtggaagttgtggatgagtcagacaacata
acagcacaaccaaagctgattgtccactgtaagtttctaggggctccaagcctaccagtc
tacactgtggattgcagtagctctgggaccagcatcctaacagggccagcaattcaagtt
cagaacattaagaaagaccagacgctgactgccaggattgagatacctagttgtaaagat
gtgtcacctgtggaaaagactatcaagttacttcccagtagtcacgttgctcgcctacag
atatttagtgtagagggacaaaaggctatccagatcaaacatcaggatgaggttaattgg
atagcaggtgatgtaatgcaaaatctaatttttcaaatgtatgatgaaggagaaagagaa
atcaatattacaccatccttggcagaaaaaattaaagttaactggactcctgaggttaac
aaagaacatttgctacaaggtctgcttcctgatgtgcaagtaccaacatctgtgaaagat
gtgcgctactgccaggtttctttccaagatgaccacgtctctctggaaagtgcttttaca
ataagaccacttcctgatgatcccaaacatttaaaatgtgagttaaaaggaggaaaaacg
gtgcagatgggccaagagcttcaaggagaaatagttgttatagttgcagatcagtatgga
aatcagatcccagcattttcaccagattctttatctacgttgtcaattgctggagttgga
cttgataactctaacttgaaaatcacttttgaggctaacacacagagcataagtgtacga
ggtatcagatttactccaggtcctcctggacataaggatctttgttttacttggcgagag
ttttctgactttattcgagtgcacctagtttctggacctccaaccaagctgctgcttatc
gactggccagagctaaaagagccccttccagtgatcaatggaagacagttacagaaccct
ctcattgttcaactttgtgatcagtgggataatcacgcattagtctcacatgttaaaata
agtctcataaaagtcaacagtttaaggctattaccttcaaaccaacagcataaaacagat
gataaaggcagagccaatttgggggtattcactgtttttgctccaaggggagtacatacc
gtgcaggttaaaggtgtctataacaagagtaccatagaaggacctacaattaagttcatg
attcttccagaccctgaaaagcctattcgtctcaatgttaaatatgacaaagatgcctct
ttcatagcaggtggcatattcactgattttatggttagtgtgatctctgaaggtggtaat
gtcatcaaaaatatcaatccaacacgcatttccatgaaaatgtggaagctgtccagtggc
gtgagccggccaccaacaaatgcagaaacatttagttgtaataaaataaaagataatgac
aaagaagatggctgcttctatttcagggaaaaaacaatccctaacaaagttggggcatac
tgtatccagtttgattttatgatcgataaaacaaatatgctcaacagcgaacaggttata
attgatgttctgccaaatgaacctatgaagttggttcctgacattcaaccagctacccca
gctgtttctaatgttcgctcaattgccagcaggaccttggtcaaagacctacatctcagt
attacggataattatggtaatcatactggaatgaatttgattggcactgtagtagctacc
attaaaggttttaatgaggaggacactgatactccactcttcatcgggaaagttaggaca
cttgaatttccctttgtgaatggttctgctgaaatcacaactctagtgctggcagaaaat
agtcccggaagggatagtactgagtattttattatctttgagcctcgactgtcaacttta
tcaagaacgttggaaccatatagcctgccatttatgttttatgatgatgttaaaaagcag
caacaaatggcagcacttacgaaggaaaaggaccagttatcgaagtccatcgttatgtat
agaagtctctttgatgccaacaagcagcttgttgatgaaatgaaatgccaagttgaagaa
gcaaaattaaaagaggtccagctgagaaatgaactaaaatcacacaatattgatattcct
acaacacaacagatacctcacattgaagcacttttggaaaaaaagataacagaacaaaat
gaactaaaaaaaaagcccagaagatcatgtactcttccaaactacactaaacgcagtgga
gatgttttgggaaagattgcacatctcgcacaaatcgaagatgatcgagctgcaatggtt
atctcttggcacctggcaagtgacatggattgtgtggtcaccctgaccacagatgccgca
cgctctatctatgatgaaactcaaggtcgtcagcaggtgttgcctcttgattctatttat
aggaaaactcttccagattggaaaagacctctacctcattaccgaaatggtaaattacat
tttaaaccttttggagatccagtctttgcccgagacttgttaacattcccagacaatatt
gaacattgtgaaacagtttttggtatgctgttaggagacaccattattttggataatcta
gatgcagccaatcattatagaagagaggttgttaaaatcacacactgtcccacattactg
actagagatggagatcgtatcagaagtaatggaaagtttgggggccttcagaataaagct
cctccaatggacaaacttcggggaatggtcttcggagctccagtaccaaaacagtgtgtg
atcttggggaaagaaatagatcttattcaacagtaccgtactgctgtgtgcaagctgagt
tctgtgaacaaggacctgactaatcagttacagtaccttcacactcccgatatgaagaag
aagaagcaagaacttgatgaacaggaaaaaagtctgaaactaatagagcaaaaactcggt
atgactcctacacggaagtgcagtgactcattctgtcactcagcaaagattgagttgaca
gagtgtccaattcctgctaaaagaatgagaagagaatctactagacaaaatagaagacca
aaaggtgatgtaccaaactga
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integrated database retrieval system
