Pecten maximus (king scallop): 117327240
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Entry
117327240 CDS
T07399
Name
(RefSeq) TNF receptor-associated factor 6-B-like isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax04120
Ubiquitin mediated proteolysis
pmax04140
Autophagy - animal
pmax04144
Endocytosis
pmax04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117327240
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117327240
04140 Autophagy - animal
117327240
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
117327240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmax04131
]
117327240
04121 Ubiquitin system [BR:
pmax04121
]
117327240
Enzymes [BR:
pmax01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117327240
Membrane trafficking [BR:
pmax04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
117327240
Ubiquitin system [BR:
pmax04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
117327240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-TRAF
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_4
TRAF3_RING
zf-RING_5
zf-RING_2
zf-TRAF_2
SRR1
zf-RING_10
zf-RING_6
MS_N
Sina_ZnF
Motif
Other DBs
NCBI-GeneID:
117327240
NCBI-ProteinID:
XP_033740034
LinkDB
All DBs
Position
1:19904560..19913264
Genome browser
AA seq
309 aa
AA seq
DB search
MEATVNDQQLSQSTSLSTETLPEPLFDLDLDRKYMCPVCLCVLKEPVQTSCGHRFCKACI
RGTFDLPTYVCSQVRNNIRVPFSRCPVDNTYFHIEKELFSDNAIKREVLSLNVRCPNIQN
ECGWNGELRNYSEHERQCMYKVISCENGCGVRVIRKDMSHHQEECSLRIVFCPHCQKQMA
HNIMSKHEVLVCQNFPVQCLQCGQVGIKRKDIGSHMSKETGDCPITIIDCPFKVYGCQVT
TTRLCMASHLEDSCHTHLSYVMDHVLTQDRHIAELVNEVTNIRQVLLQQREQQLSIDEFP
GTADDTNVV
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgacagttaatgatcagcaactctctcagtctacgagtctgtcgacggaaact
ttaccggaaccattgttcgatctggatctagacaggaaatatatgtgtccagtttgttta
tgtgtcctgaaggagccagtgcagacgtcttgtggacatcgcttctgtaaggcgtgcata
agaggaacattcgacctaccgacgtacgtgtgttcacaggtccgaaacaatatccgggta
ccattctcgagatgtcccgtagacaatacgtacttccacatagagaaagagttattttcc
gacaacgccattaagcgggaagttctgtcattaaacgtccgctgtcctaacattcaaaat
gaatgtggctggaatggtgaactgcggaactacagcgagcatgagcgacaatgcatgtat
aaagtgatttcctgtgagaacggatgtggagtgcgcgtgatccggaaggacatgtcccat
caccaggaggagtgctccctgaggatagttttctgtccccactgtcagaaacagatggct
cacaatatcatgtcgaaacacgaggttctggtgtgtcagaactttcctgtccagtgtttg
cagtgtggtcaggtcgggatcaaacggaaagacatcggcagtcacatgagcaaggagacc
ggggactgtccaatcacaatcatcgactgtcctttcaaagtgtatggctgtcaagtaacg
actacgagattatgtatggcatcccacctcgaagacagctgccacacccatctctcctac
gtgatggaccatgtgctgacacaggatcgacatattgccgagctggtaaatgaggttaca
aatattcgccaggtgttgttgcagcaaagagaacagcaactatccatcgacgagtttccc
ggaactgctgatgacactaatgttgtctaa
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