Prochlorococcus marinus NATL1A: NATL1_21501
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Entry
NATL1_21501 CDS
T00467
Symbol
lig
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pme
Prochlorococcus marinus NATL1A
Pathway
pme03030
DNA replication
pme03410
Base excision repair
pme03420
Nucleotide excision repair
pme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NATL1_21501 (lig)
03410 Base excision repair
NATL1_21501 (lig)
03420 Nucleotide excision repair
NATL1_21501 (lig)
03430 Mismatch repair
NATL1_21501 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pme03032
]
NATL1_21501 (lig)
03400 DNA repair and recombination proteins [BR:
pme03400
]
NATL1_21501 (lig)
Enzymes [BR:
pme01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NATL1_21501 (lig)
DNA replication proteins [BR:
pme03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NATL1_21501 (lig)
DNA repair and recombination proteins [BR:
pme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NATL1_21501 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NATL1_21501 (lig)
MMR (mismatch excision repair)
DNA ligase
NATL1_21501 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NATL1_21501 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
Nlig-Ia
DUF2990
Motif
Other DBs
NCBI-ProteinID:
ABM76706
UniProt:
A2C5E6
LinkDB
All DBs
Position
1807011..1809083
Genome browser
AA seq
690 aa
AA seq
DB search
MNSNFNQHFERIKELRALLNKANYSYYVLDSPEIDDAVYDQLYRELIEIENIHPSLITDD
SPSQRLGGVPSKGFKNVEHNIPLLSLDNAFNLNELESWYGRISKLISSENKNIKKVDDLE
LICELKIDGNAISLRYENGILTRAATRGDGKTGEDITTNIRTISTIPLRLLLENPPSWVE
IRGEAFMPNNIFNKLNIERKNTDQPLFANPRNSCAGTLRQLDPKIVASRKLDFFAYSLYF
PENWEPTDNNFKKPISQSESLEFLKNIGFKVNTTYETTKTLNEANKYYKYWEVKKDFLAY
ATDGIVVKIDKFDIQNLLGATNKAPRWAIAVKYPAEEKATKLRKIIFQVGRSGAVTPVAE
FESIELAGTSVNRATLHNAKRLASLDLHYEDTIIVRKAGEIIPEVIRVIKEFRKVDAKLV
QLPQNCPECNSKLILESNEAITKCINYGCEAKLKGLLRHWVSKGSMNIDGLGEKIINQLV
NEGYVKSIADLYKLEIDSLLELERFGEKSANNLLIEINESKNKNWHKQLYGLGIPHIGEA
NAKSLSNNFNSIEELNAIAKESPEKISNIYGFGNEMKDSIVKWFDDSNNQTLIKELKAIG
FSLKESLDSNYNSNQSNVFDGKSFVLTGTLDSLTRDEAKELIESAGGKVSSSISKKTDFL
VSGEKAGSKLNKAQELGVKIINENELKLLL
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
gtgaattcaaactttaatcaacattttgaacgtataaaagagcttagagctttactcaat
aaagcaaattactcctactatgtattagattcaccagagatagacgatgctgtttatgat
caactctatcgagaattaattgaaattgaaaatattcacccatctttaattactgatgat
agcccctcacaaagattaggaggtgttccttctaaaggattcaaaaatgttgagcataat
attcctcttttaagtctagataatgcttttaatttaaacgaattagaatcatggtacgga
aggatcagcaaattaataagttcagaaaataaaaatatcaaaaaagttgatgatctagaa
cttatatgtgaattaaaaattgatggaaatgctatttcattaagatatgaaaatggaatt
ttaactagagcagcaactcgtggagatggaaaaactggagaagatatcactactaatatc
agaacaatttcgacaattcctttacgtttattattagaaaatccaccctcatgggttgaa
attagaggcgaggctttcatgcccaataatatatttaataaactcaatattgaaagaaaa
aatactgatcaaccactctttgcaaatcctagaaactcttgtgctggaacattaagacaa
ttagatcccaaaatagttgcatctagaaaacttgacttcttcgcatacagtctttatttt
ccagaaaattgggagccaactgataacaattttaaaaaaccaatttctcaatctgaatcg
cttgagtttttaaaaaatattgggtttaaagttaatactacatatgaaacaacaaaaaca
ttaaatgaagcaaataagtattacaaatattgggaagttaaaaaagattttttagcttat
gcaactgatggcatagtagtaaaaatagataaatttgacatacaaaatctattaggagca
accaataaagctccaagatgggcaattgctgtcaaatatccagcggaagagaaagcaacc
aagttaagaaagataattttccaagtaggtcgctctggtgcagttacaccagtagcagaa
tttgaatcgatagagcttgcaggaacatctgtgaatcgtgcaactcttcataatgcaaaa
agacttgcctctttagatcttcattatgaagacacaataattgttcgaaaagccggggag
attattcctgaagtgattagggttataaaagagtttagaaaagttgatgcaaaattagtt
caacttcctcaaaactgcccagaatgtaattcgaagttaattctagaatcaaacgaagca
attacaaaatgtattaattatggatgcgaagcaaaattaaaaggtcttttacgtcattgg
gtcagtaaaggttcaatgaacatagatggattaggtgaaaaaattattaatcaattagta
aatgaaggatatgtaaagtcaatcgctgatttatacaaacttgaaattgattccctttta
gagcttgaaaggtttggtgaaaaatctgcaaataatttactaatagaaattaacgaatct
aaaaacaaaaattggcacaaacaactgtacggcttagggatacctcacataggagaagcg
aatgctaaatctctttcgaacaactttaatagtatcgaagaacttaatgctattgcgaag
gagtcacctgaaaaaatatccaatatttatggatttgggaatgagatgaaagattcaata
gttaagtggtttgatgattctaataatcaaaccttaattaaagaattaaaagcaattgga
ttttctctaaaagagagtttagattcaaactacaattcaaatcaatcaaatgtttttgat
ggtaagagttttgtcttaacagggactttggattcacttacaagagatgaagcaaaagaa
ttgatagaaagtgctggagggaaagtcagctcttcaattagtaaaaaaacagacttctta
gtatcaggagaaaaagctggaagtaaattaaacaaagcacaagagcttggagtaaaaata
attaacgaaaatgaattgaagctattactataa
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