Polymorphobacter megasporae: KTC28_15460
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Entry
KTC28_15460 CDS
T08573
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmea
Polymorphobacter megasporae
Pathway
pmea03030
DNA replication
pmea03410
Base excision repair
pmea03420
Nucleotide excision repair
pmea03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KTC28_15460 (ligA)
03410 Base excision repair
KTC28_15460 (ligA)
03420 Nucleotide excision repair
KTC28_15460 (ligA)
03430 Mismatch repair
KTC28_15460 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmea03032
]
KTC28_15460 (ligA)
03400 DNA repair and recombination proteins [BR:
pmea03400
]
KTC28_15460 (ligA)
Enzymes [BR:
pmea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KTC28_15460 (ligA)
DNA replication proteins [BR:
pmea03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KTC28_15460 (ligA)
DNA repair and recombination proteins [BR:
pmea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KTC28_15460 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KTC28_15460 (ligA)
MMR (mismatch excision repair)
DNA ligase
KTC28_15460 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KTC28_15460 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
UAJ09685
LinkDB
All DBs
Position
complement(3299168..3301282)
Genome browser
AA seq
704 aa
AA seq
DB search
MAEDTAQPAEPAAELARLAAEIAEHAARYHRDDAPTISDADYDAMVRRNAELEAAYPDLK
RADSPSETVGAVAAAGFGKVVHSRPMLSLDNAFADDEVVEFIARVRRFLRLGDDEAVAIT
AEPKIDGLSVSLVYRDGVLVSGATRGDGAVGEDVTANLATVSDVPQRLPDGAPAIVEVRG
EIYMSKADFLALNAAQASAGQRLFANPRNAAAGSLRQLDVAVTRARPLRLFAHGWGEMST
VPGDTQAGVMAAISGWGFPVSDRLKVCDTVDDALSVYRSIEIDRAELPYDIDGVVYKVDR
LDWQARLGQVARSPRWALAHKFPAERATTTLLAIDIQVGRTGQLTPVARLEPVGVGGVIV
TNATLHNEDEIARKDVRVGDIVELQRAGDVIPQILGPVPSDAPRGEAFVFPGVCPACGSL
AVREAGEVARRCTGGLICPAQRIERLRHFVSRRALDIEGLGSERIELFVGEGLITTPADI
FRLRDHRDALVARKGFEAKSVDNLLAGIEARRDVPLDRLLFGLGIRHVGEVTARDLARAF
VTYQGFAERVAAALEHLQAAVPVIGETDDKFRKRRAGELAALFAVGGVGPEIAEAITDFF
AEAHNRDLVADLLAAITVADLVHATEASQVSGKIVVFTGTLETMSRDEARAQAERLGARV
AASVSAKTDLVIAGPGAGSKAAKAAALGITVIDEAAWQEIAGAV
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagataccgctcaacctgccgaacccgccgccgaactcgcgcgtctcgcggcg
gaaatagccgagcacgccgcgcgttatcaccgcgacgacgcgccgacgatcagcgatgcc
gactacgatgcaatggtccggcgcaacgccgagctagaggcggcgtatccagacctgaag
cgcgccgattcgccgtccgaaaccgtcggggctgtggctgcggcggggtttggcaaggtc
gtccactcccgcccgatgttgagtctcgacaatgcattcgccgatgacgaggtggtcgag
ttcatcgcacgggtccgacggtttctccggcttggtgatgacgaagccgtcgccataacc
gccgagccgaagatcgacgggttgtcggtgtcgctcgtctatcgcgacggcgtactggtc
agcggggcgacgcgcggcgacggggcggtgggcgaggacgttaccgccaacctcgcgacg
gtcagcgacgttccgcagcggctgcccgatggggcgccggcgatcgtcgaggtgcgtggt
gaaatctatatgtcgaaggccgacttcctcgccttgaacgcggcgcaggcgagcgcgggg
cagcggctgttcgccaatccgcgcaacgcggcggcggggtcgctgcgccagctcgacgtc
gcggtgacgcgcgcgcggcctctgcgcttgttcgcacatggctggggcgagatgagcacc
gtccccggcgacacccaggcgggggtgatggcggcgatctccggctggggctttccggta
agcgatcgccttaaggtctgcgataccgtcgacgacgcgctaagtgtctatcgcagcatc
gaaatcgaccgtgccgagctgccgtacgacatcgacggggtggtctataaggtcgatcga
ctcgactggcaggcgcggcttgggcaggtcgcgcggtcgccgcgctgggcgctcgcgcat
aaattccccgccgagcgcgcgacgacgacgctgctcgcgatcgacatccaggtcgggcgg
acggggcagttgaccccggtcgcgcggctcgaacctgtcggcgtcggcggggtgatcgtg
accaacgcgacgctccacaacgaggatgagatcgcgcgcaaggacgtccgcgtcggcgac
atcgtcgaactccagcgcgccggcgatgtcatcccgcagatcctcggcccggtgccgagc
gacgccccgcgcggcgaagcctttgttttcccaggcgtctgcccggcgtgcggcagcctt
gcggtgcgcgaggcgggggaggtcgcgcggcgctgcaccggcgggctgatctgcccggcg
cagcggatcgagcggctgcggcacttcgtgtcgcggcgcgcgctcgacatcgagggactc
gggtcggagcggatcgagctgttcgtcggcgaggggctgatcacgactccggccgatatc
ttccgtctcagggatcaccgcgatgcgctcgtcgcgcgcaaggggttcgaggcgaagtcg
gtcgacaacctgctcgcggggatcgaggcgcggcgcgacgtgccactcgaccgcctcctg
ttcgggctcggcatccgccacgtcggcgaggtcaccgcacgcgatctggcgcgggcgttc
gtgacatatcaaggctttgccgagcgggtcgcggcggcgctcgagcatctgcaggcggcg
gtgccggtgatcggcgagaccgacgacaagttccgcaagcggcgcgccggagagctggcg
gcgctgttcgcggtcggcggggtcggccccgagattgccgaggcgatcaccgacttcttc
gccgaggcgcataaccgcgatctcgtcgccgacctgctcgcggcgatcacggtcgccgat
cttgtccatgcgaccgaggcgtcgcaggtgtcgggcaagattgtcgtgttcaccggcacg
ctcgaaacgatgagccgcgacgaggcgcgggcgcaggccgagcggctgggggcgcgggtc
gcggcatcggtgtcggcgaagaccgatctggttattgctggtcccggtgcggggtctaaa
gcagcgaaagcggcggcgctcgggatcacggtgatcgacgaagcggcatggcaggaaatc
gccggagcggtttga
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integrated database retrieval system
