Paraburkholderia megapolitana: FNZ07_24750
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Entry
FNZ07_24750 CDS
T06515
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmeg
Paraburkholderia megapolitana
Pathway
pmeg03030
DNA replication
pmeg03410
Base excision repair
pmeg03420
Nucleotide excision repair
pmeg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FNZ07_24750 (ligA)
03410 Base excision repair
FNZ07_24750 (ligA)
03420 Nucleotide excision repair
FNZ07_24750 (ligA)
03430 Mismatch repair
FNZ07_24750 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmeg03032
]
FNZ07_24750 (ligA)
03400 DNA repair and recombination proteins [BR:
pmeg03400
]
FNZ07_24750 (ligA)
Enzymes [BR:
pmeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FNZ07_24750 (ligA)
DNA replication proteins [BR:
pmeg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FNZ07_24750 (ligA)
DNA repair and recombination proteins [BR:
pmeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FNZ07_24750 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FNZ07_24750 (ligA)
MMR (mismatch excision repair)
DNA ligase
FNZ07_24750 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FNZ07_24750 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
MctB
BRCT_2
5_3_exonuc
Hint
Motif
Other DBs
NCBI-ProteinID:
QDQ84315
LinkDB
All DBs
Position
2:complement(2580526..2582577)
Genome browser
AA seq
683 aa
AA seq
DB search
MARTSVSKPASSGPSERVAWLRAELERANHAYYVLDQPELPDAEYDRLFKELQQIESEHP
DLVTPESPTQRVGGEAARGFEPVVHTQPMLSLNNGFADEDIVAFDRRVGDALGHTPVGYA
CELKFDGLAISLRYVDGRFVQASTRGDGATGEDVTENIRTVRSIPLTLKGPRIPKVLDVR
GEVLMFKRDFERLNARQREAEQREFANPRNAAAGSLRQLDSRITAQRPLSFFAYGIGVLE
GFEMPGTHSELLDWYAELGLPVNNERAVVEGADGLLAFFHAVGEKRERLPYDIDGVVYKV
NRRDEQDKLGFVSRAPRFALAHKFPAQEALTKLLAIDVQVGRTGAITPVARLEPVFVGGA
TVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLDRRPADAREFVMPTVCPVC
GSAIERLPDEAIARCTGGLFCPAQRKQALWHFAARRALDIDGLGEKIIDQLVEQNLVRTP
ADLFNLGFATLSALDRFADKSAQNLLDSLDKAKHTTLARFIYALGIRHVGESTAKDLAKH
FGSLDPIMNASVEELLEVNDVGPVVAEALHQFFAEEHNRTVIEQLRAPGRVTWEEGPPAP
KAPQGVLAGKTVVLTGTLPNLSREDAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAK
AEELGITVLDEDGMRTLLEGHST
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaaccagcgtctccaaaccggcatccagtggcccgtccgaacgggtcgcgtgg
ctgcgcgcagagctcgagcgcgcgaatcacgcgtactacgtgctcgatcaacctgaattg
ccggacgcggaatacgaccggctttttaaggagctacagcagatcgagtccgagcacccc
gatctggtcacgcccgaatcgcccacccagcgggtcggcggcgaagcggcgcggggtttc
gagccggtcgtgcacacgcagccgatgctgtcgctcaacaacggttttgccgacgaagac
atcgtcgcgttcgaccggcgcgttggcgatgcgctcggccacacgccggtcggctacgcg
tgcgaactgaagttcgacgggcttgccatttcgctgcgttatgtcgacggccgtttcgtg
caggcctcgacgcgcggcgacggtgcgactggcgaagacgtcaccgaaaacatccgcacg
gttcgctcgattccgctcacgctcaagggcccgcgcatcccgaaggtgctcgacgtgcgc
ggcgaagtgctgatgttcaagcgcgacttcgagcgtctcaacgcgcggcagcgcgaagcg
gaacagcgcgaattcgcgaacccgcgcaacgcggcggccggcagtttgcggcagctcgat
tcgcgtatcacggcgcagcgtccgctgtcgttcttcgcgtacggaatcggtgtgctcgaa
ggcttcgagatgcccggcacgcacagtgagctgctcgactggtatgcagagctggggctg
ccggtgaacaacgagcgggcggtggtcgaaggggcggatggattgctcgcgttctttcac
gcagtcggcgagaagcgcgagcggctgccgtatgacatcgatggcgtggtgtacaaggtg
aaccgccgcgacgagcaggacaagctcggcttcgtgtcgcgggcgccgcgctttgcgctg
gcacacaaattcccggctcaggaagcactgacgaagctgctcgccatcgacgtgcaggtc
ggccgcactggcgcgatcacaccggtggcgcggctggagccggtgttcgtcggcggggcg
acggtgaccaacgccacgctgcacaacgaagacgaagtgcgtcgcaaggacatccgcatc
ggcgacacggtgatcgtgcggcgcgccggcgacgtgattcccgaagtggttagcgcgctg
ctcgaccgccgtcccgcggacgcacgcgaattcgtgatgccgaccgtgtgcccggtgtgc
ggttcggcgatcgagcggctgccggacgaggcgattgcgcgctgcaccggcggcctcttc
tgtccggcgcagcgcaagcaggcgctctggcatttcgcggcgcggcgcgctctcgatatc
gatgggctcggcgaaaagatcatcgaccagctggtcgaacagaacctcgtgcgtacccct
gcggacctgttcaatctgggcttcgcgacgctgtccgcgctcgatcgcttcgcggacaag
tcggcgcagaatctgctcgattcgctcgacaaagcgaagcacaccacgctcgcgcgcttc
atttacgcgctcggtattcgccatgtgggcgaatcgactgcgaaagaccttgcaaaacat
ttcggctcgctcgatccgatcatgaacgcatcggttgaagagctgctggaagtgaacgat
gtcgggccggtggtagccgaagcgctgcatcagttcttcgccgaagagcacaaccgcacc
gtgatcgaacaactgcgtgcaccgggccgcgtcacgtgggaggaaggaccgcccgcgccg
aaggcgccgcaaggtgtgctcgccggcaagaccgtggtgttgaccgggaccttgccgaac
ctgtcgcgcgaggacgcgaaggagatgctcgaagcggcgggcgcgaaggtggccggttcg
gtatcgaagaaaaccgattatgtggtggccggcgccgaagcgggcagcaagctcgcgaaa
gccgaggaactcggcatcacggtgctggacgaagatggtatgcgcacgctcctggagggg
cactcaacatga
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