Paracoccus methylovorus: JWJ88_04915
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Entry
JWJ88_04915 CDS
T08684
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmeh
Paracoccus methylovorus
Pathway
pmeh03030
DNA replication
pmeh03410
Base excision repair
pmeh03420
Nucleotide excision repair
pmeh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmeh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JWJ88_04915 (ligA)
03410 Base excision repair
JWJ88_04915 (ligA)
03420 Nucleotide excision repair
JWJ88_04915 (ligA)
03430 Mismatch repair
JWJ88_04915 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmeh03032
]
JWJ88_04915 (ligA)
03400 DNA repair and recombination proteins [BR:
pmeh03400
]
JWJ88_04915 (ligA)
Enzymes [BR:
pmeh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JWJ88_04915 (ligA)
DNA replication proteins [BR:
pmeh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JWJ88_04915 (ligA)
DNA repair and recombination proteins [BR:
pmeh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JWJ88_04915 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JWJ88_04915 (ligA)
MMR (mismatch excision repair)
DNA ligase
JWJ88_04915 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JWJ88_04915 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
QRZ14004
LinkDB
All DBs
Position
1:979453..981735
Genome browser
AA seq
760 aa
AA seq
DB search
MAGQDEDQAVPAENAALPSVSNLDVEAVAAEHALLSDKVAQANLAYYQQDAPFISDAEYD
ACKQRLEEIEGRFPELAHSGSPTAQVGAAPDQRFAKIAHRLPMLSLENGFSQGDVESFVQ
RVRSFLNLPAGVALEFTAEPKIDGLSLSLRYEGGQLVQAATRGDGAVGENVTANARTIAD
IPQKLAGTGYPDVLEIRGECYMSHEDFEKLNQSDTGRVFANPRNAAAGSLRQLDPGVTAA
RPLRFFAYAWGEVSAPFAGTQIEAVRRMRDFGFQINALTRTCGSVPEMLDAWAEIEQMRA
TLGYDIDGVVYKVDDLTYQARLGMRSTTPRWALAHKFPAERAWTRLEAIDIQVGRTGALS
PVARLHPVTVGGVVVSNATLHNEDYIAGQGADGSEIRGGKDIRIGDWVEVYRAGDVIPKV
ADIDLSKRPPEAVPYAFPTICPECGSPAIREEGDSVRRCTGGLICPAQAVEKLRHFVSRA
AFDIEGLGAKLVEELFRDGWIAEPADIFTLQDRYGHGQLTQLKNREGWGEKSATSLFEAI
EKRREIPLARLLFALGIRHVGEVAAQDLARHYREWDALVRALDTARPAALAHRIADDAAQ
GERDAARAEGRRARPSEARAAALSQVDLSAAAINAWAGLIAADGIGPGLAMSLSDAFANQ
RERAAIERLVAHLTILPPEARATNSAITGKTLVFTGTLEKMTRAEAKARAEAMGAHVAGS
VSAKTDLLIAGPGAGSKAKKAAELGIKVIDEDEWLTIAQR
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggccggacaagacgaggatcaggctgttccggcagagaatgcggccctgccgtctgtt
tccaatctcgacgtcgaggcggtcgccgccgaacatgccctgctgagtgacaaggtggcg
caggcaaacctggcctattatcaacaggacgcgccctttatcagtgatgcggaatacgac
gcttgcaagcagcggctggaagagatcgaagggcggtttcccgaactggcccactccggc
agccccacggcgcaagtcggtgctgcgccagaccagcgttttgccaagattgcgcatcgc
ctgccgatgctgtccctggagaacggattctctcaaggcgacgtcgaatcctttgtgcaa
agggtacgctctttcctgaacctgcctgccggggtcgcgctggagtttacggccgaaccc
aagatcgacggcttgtcgttgtcgctgcgctacgagggcgggcaactggtccaagctgca
acccggggtgacggcgcggtgggcgaaaacgtgaccgccaatgcccgcaccattgccgat
attccccagaaacttgccgggacaggctatcccgatgtgctggaaatccgcggcgaatgc
tacatgtcgcatgaggattttgaaaagctgaaccagtccgataccgggcgcgtcttcgcc
aatccgcgcaatgccgctgcgggctccttgcgccagctcgaccccggcgtgacggcggcg
cgtccgctgcgcttcttcgcctatgcttggggagaggtcagcgcgccctttgccggcact
cagatagaggcggtaaggcgcatgcgtgatttcggcttccagatcaacgccctgacgcgg
acctgcggttcggtgccagagatgctggatgcctgggccgaaatcgagcagatgcgggca
acgctgggttacgacatcgacggcgtggtctacaaggtcgacgatctgacctatcaggcg
cggctgggcatgcgttccacaacgccgcgatgggctcttgcccacaaatttccggccgaa
cgcgcctggacccggcttgaggcgatcgacatccaggtcggtcgcacaggtgcgctcagc
ccggtcgcccggctgcatccggtgacggtgggcggcgtggtcgtctcgaacgcaaccctg
cacaatgaggattatatcgccggtcagggcgcggacggcagcgagatccgcggcggcaag
gatatccgcatcggcgattgggtcgaggtttatcgcgccggtgacgtgatccccaaggtt
gccgacatcgacctgagcaagcgcccgcccgaggcggtgccctacgcttttccgaccata
tgtcccgagtgcggttcgccggcaatccgcgaggaaggcgattcggtacggcgctgcacc
ggcgggctgatctgtcccgcccaggcagtcgagaagctgcgccatttcgtctcgcgcgcc
gcttttgatatcgagggactgggggccaagctggtcgaagaactgttccgcgatggctgg
atcgccgagcccgccgatatctttaccttgcaggatcgctacggtcacggccagcttacc
caattgaagaaccgcgaaggctggggcgaaaaaagtgccaccagcctgtttgaggccatc
gaaaagcggcgtgaaatccccttggcgcgcctgcttttcgcgcttggtatccgccatgtc
ggcgaggtcgcggcgcaggatcttgcccgtcattacagagagtgggatgcgctggtcagg
gcgcttgacacggcccgccctgccgcgctggcccatcgcattgccgacgatgccgcgcag
ggcgaacgtgacgcagcacgggccgaaggccgccgcgcccgtccttccgaggctcgcgca
gccgcgttgtcgcaggtcgacctgtccgccgcggcgataaacgcctgggccggactgatt
gccgccgacggaatcggtccggggctggctatgtctctttcggacgcctttgccaatcaa
cgcgagcgggcggcgatcgagcggctggtggcccacctgaccatcctgccgccagaagcg
cgcgccaccaacagcgccatcaccggcaagacactggtctttaccggcacgctggaaaag
atgacgcgggccgaggcaaaggcccgggccgaggcgatgggtgcacatgtcgcgggctcg
gtttcggccaagacggatctgctgatcgccggtccgggcgccggctcgaaggcgaaaaag
gccgccgaacttggcatcaaggtgattgatgaggatgaatggctgacgatcgcgcagcgg
tga
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