Poecilia mexicana (shortfin molly): 106931269
Help
Entry
106931269 CDS
T08022
Symbol
tardbp
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
pmei
Poecilia mexicana (shortfin molly)
Pathway
pmei03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmei00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106931269 (tardbp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmei03019
]
106931269 (tardbp)
Messenger RNA biogenesis [BR:
pmei03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
106931269 (tardbp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TDP-43_C
TDP43_N
RRM_1
RRM_7
RRM_3
Motif
Other DBs
NCBI-GeneID:
106931269
NCBI-ProteinID:
XP_014864795
Ensembl:
ENSPMEG00000016541
LinkDB
All DBs
Position
Unknown
AA seq
396 aa
AA seq
DB search
MSELYIRVAEDENEEPMEIPSEDDGTVLLSSVSAQFPGACGLRYRNPESQCMRGVRLVEG
VLHAPESSWGNLVYVVNYPKDNKRKMEEIDAASAVKIKRGFQKTSDLIVLGLPWKTTEQD
LKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFADYETQTKVIAQRHMIDGRWCDCKLPN
SKASPDEPMRSRKIFVGRCTEDMTTDDLRQYFMQYGEVTDVFIPKPFRAFAFVTFADDQV
AQALCGEDLIIKGVSVHISNAEPKHNNSRQMMDRGRFGAGGFSQGYGSNRGGLGSGSGGV
NFGALGLNPAMVAAAQAALQSSWGMMGMLANQQGLTTAAGTASTTRDQTYSSASTSYSSP
SSASLGWAGGTNTASSSGFSSGFGTSMESKSSSWGM
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagctgtacattcgggtggctgaggatgagaacgaggagcccatggagatcccc
tcagaggacgatgggactgttctactatcctcggtatcagcccagttcccgggggcttgc
ggtcttcggtacagaaacccggagtcccagtgcatgaggggggtccggctggtggagggc
gtcctgcatgcaccagagagcagctggggaaacctggtctatgtcgtaaactatcccaaa
gataacaaaaggaagatggaggaaattgacgcggcgtcggctgttaaaatcaaaagaggt
tttcagaaaacgtcagacctcatagtcctcgggttgccttggaaaacaacagaacaagac
ctgaaggattactttagcacctttggggaggtcattatggtacaggtgaagagagatgca
aaaactggcaactcaaaaggttttgggttcgtccgctttgcagactatgagacgcaaacc
aaagtcattgctcagagacacatgattgatggacgatggtgtgactgcaaacttcccaac
tcaaaggcatctcccgacgaaccgatgcggagccgtaaaatctttgtcggccgctgcaca
gaggacatgacgacggacgatctgaggcagtacttcatgcagtacggtgaagtcactgat
gtcttcattcccaaacctttccgggcctttgcatttgtcacgtttgctgatgatcaggtc
gcccaggctctgtgcggagaggacctgatcatcaagggcgtcagcgtgcacatctccaac
gctgagcccaaacacaataacagtaggcaaatgatggatcggggtcggtttggggctggc
gggttcagtcagggctacggcagtaatcgcggggggctaggcagcggtagtggaggggtt
aactttggggctctgggccttaacccagcgatggtggcagcagctcaggcggcactgcag
agcagctgggggatgatgggcatgctggctaaccagcagggcttgaccacggcggcaggc
acagcctcaaccaccagagatcagacgtatagctctgccagcaccagctacagcagcccc
agctcagccagcctgggctgggccggaggcactaacacggcctccagcagcggcttcagc
tccggctttggcacgtcaatggagtccaagtcttctagctggggaatgtag
DBGET
integrated database retrieval system
