Phyllobacterium meliloti: LLE53_002240
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Entry
LLE53_002240 CDS
T11258
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmel Phyllobacterium meliloti
Pathway
pmel03030
DNA replication
pmel03410
Base excision repair
pmel03420
Nucleotide excision repair
pmel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LLE53_002240 (ligA)
03410 Base excision repair
LLE53_002240 (ligA)
03420 Nucleotide excision repair
LLE53_002240 (ligA)
03430 Mismatch repair
LLE53_002240 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmel03032
]
LLE53_002240 (ligA)
03400 DNA repair and recombination proteins [BR:
pmel03400
]
LLE53_002240 (ligA)
Enzymes [BR:
pmel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LLE53_002240 (ligA)
DNA replication proteins [BR:
pmel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LLE53_002240 (ligA)
DNA repair and recombination proteins [BR:
pmel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LLE53_002240 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LLE53_002240 (ligA)
MMR (mismatch excision repair)
DNA ligase
LLE53_002240 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LLE53_002240 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UGX86713
LinkDB
All DBs
Position
480616..482760
Genome browser
AA seq
714 aa
AA seq
DB search
MADISVEELSEAEAAEELGRLAAEIAQHDYRYNTEDAPTISDGAYDALRRRNLAIEQRFP
HLKREDSPSNKVGATVSEKFGKVTHSIPMLSLDNAFSDQDVQDFVDRIRRFLKLSASAPV
AITAEPKIDGLSLSLRYELGRLVTAATRGDGTTGENVTLNARTVASIPNVLGGNPPDVLE
VRGEVYMSHADFAAMNERQIQDGKPVFANPRNAAAGSLRQLDATITASRPLQFFAYAWGE
VSEMPASTQMGMVEAFKSYGFRVNPLMQKFDTVEGLVKHYHQIEEQRATLGYDIDGVVYK
VDDLALQQRLGFVSRSPRWAIAHKFPAERAITILRGIDIQVGRTGALTPVARLEPVTVGG
VVVTNVTLHNEDYIKGIGQNGQPIREGRDLRVGDTVVVQRAGDVIPQIVDIVADKPRGPS
PYVFPDTCPACGSHAVREEGEAVRRCTGGLICPAQAVERIRHFVSRNAFDIEGLGEKQVE
FFFKSDDPALHIGTPADIFTLRKRQEASLTKLENIDGFGAVSVKKLYDAIDDRRQVTLSR
FVYALGIRHVGEVNAKRLAKAYRSYDALAAVAQAATLPVDKSDKGNDAWRELNDVEGIGS
IVAEALVDFYAEEHNRTALSALLAEVTPLDEEVRTVGNSPVAGKTIVFTGSLERMSRDEA
KAMAERYGAKTAGSVSKKTDLVVAGPGAGSKLTQAQSLGIEVIDEDSWFTLVGA
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggcagatatttccgtagaagaattgagcgaagcagaagcggcagaggagcttggccgt
ctggcggcagaaattgcccagcatgattaccgctataatacggaagacgccccgacgatt
tccgatggtgcgtatgacgccctgcggcgcaggaaccttgccattgagcaacgatttccg
cacctgaagcgtgaagattcgccttccaacaaggtgggtgcgaccgtttcggagaaattc
ggcaaggtcacacactccataccgatgctgtcgctggacaatgccttttccgatcaggat
gtgcaggattttgttgatcgcatcaggcggttcctgaaattgagcgcgagcgcgccggtt
gcaatcaccgcagagccaaagattgacggactgtcgctgtcactgcgctatgagctgggc
cggctggtcacggcggcaacccgcggcgatggcacgacgggcgaaaacgtcacgctcaat
gcccgcactgtggccagcattcccaatgtgcttggcggcaatccgcctgacgtgcttgaa
gtgcgcggcgaagtctatatgagccatgcggattttgccgcgatgaacgagcgccagata
caggatggcaagccggtttttgccaatccgcgtaatgcggcggcgggttccctgcgccag
cttgatgcaacgattaccgcatcgcggcccctgcagtttttcgcctatgcgtggggtgag
gtcagtgagatgcccgcttcaacccagatgggcatggttgaagccttcaaatcctacgga
ttccgcgttaatccgctgatgcagaaattcgacacggttgagggactggtgaagcactac
caccagattgaggagcaacgcgcgacacttggctatgatattgacggcgttgtctacaag
gttgacgatctcgctttgcagcagcggctgggctttgtctcccgcagcccgcgctgggct
atcgcgcataagttcccggcggaacgggccatcaccattttgcgcggcatcgatattcag
gttggccgcaccggcgcgttgacacccgtggcgcggctggagccggtgacggtgggcggc
gttgtcgtcaccaacgtgaccctgcacaatgaggattacatcaaagggatcggccagaat
ggccagccgatccgcgagggccgtgatctcagggttggcgataccgttgtcgtgcagcgc
gcgggtgatgtcatcccgcagattgttgatattgtcgcggacaagccgcgtggcccatcg
ccctatgttttccccgatacatgcccggcctgcggctcgcatgcggtgcgtgaggagggg
gaagccgtccggcgctgcacaggcggccttatctgcccggcacaggctgtggaacgtatc
cggcattttgtatcgcgcaatgccttcgacattgaaggtcttggcgaaaagcaggtcgag
ttcttcttcaaatccgacgatccggcgctgcatatcggcacgcctgcggatatctttacc
ttgagaaagcggcaggaagcgtcgctgaccaagcttgagaatattgacggcttcggtgcc
gtatcggtcaagaaactctacgatgcgattgatgaccggcggcaggtgacgctcagccgg
ttcgtgtacgcgcttggcattcgccatgtgggcgaggtcaatgccaagcgtctggccaag
gcctatcgctcctatgatgcgcttgcagcggtggcgcaggcggcaaccctgccggtggat
aaatccgacaagggtaatgatgcatggcgcgaactcaacgatgtcgaaggcattggcagc
atcgtggcggaagcactggttgatttctatgcggaagagcataaccgcacggcgctttct
gctttgctggcggaggtgacaccgcttgacgaggaagtgcgcaccgtcggcaactcaccg
gttgcgggcaagacaattgtcttcaccggttcgctggaacgcatgtcgcgcgacgaggca
aaagccatggccgaacgttatggtgccaaaacagccggttccgtatcgaaaaagactgat
ctcgtcgtggcgggaccgggcgccggttcgaagctgacacaggcgcagtcactgggcatt
gaagtcatcgatgaagatagctggttcacattggtgggcgcatga
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