Pseudodesulfovibrio methanolicus: V8V93_10735
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Entry
V8V93_10735 CDS
T10565
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmen Pseudodesulfovibrio methanolicus
Pathway
pmen03030
DNA replication
pmen03410
Base excision repair
pmen03420
Nucleotide excision repair
pmen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V8V93_10735 (ligA)
03410 Base excision repair
V8V93_10735 (ligA)
03420 Nucleotide excision repair
V8V93_10735 (ligA)
03430 Mismatch repair
V8V93_10735 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmen03032
]
V8V93_10735 (ligA)
03400 DNA repair and recombination proteins [BR:
pmen03400
]
V8V93_10735 (ligA)
Enzymes [BR:
pmen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V8V93_10735 (ligA)
DNA replication proteins [BR:
pmen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V8V93_10735 (ligA)
DNA repair and recombination proteins [BR:
pmen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V8V93_10735 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V8V93_10735 (ligA)
MMR (mismatch excision repair)
DNA ligase
V8V93_10735 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V8V93_10735 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
DNA_ligase_ZBD
Ribosomal_S20p
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WWX20924
UniProt:
A0ABZ2IVD8
LinkDB
All DBs
Position
2272473..2274524
Genome browser
AA seq
683 aa
AA seq
DB search
MVPDSVAERAAFLREKIEYHNHRYYVLDDPEISDQEFDVLFRELAAIEAEHPELDDPNSP
TKRVGGEPAEGFIPYEHALRLYSLDNAMDLDAWYAFHERVAKGVGTSDVAYWADPKMDGL
ALEVIYENGRYVRGATRGDGLVGEDVTGNMRTVMNLPMTLHGGDVPELIEVRGEVIMSNK
DFAALNARQEEKGDKVFANPRNAAAGTIRQLDPKVAASRPLRFMAYGVGRVQWAGRGADW
ATQQELMEGLRGLGFAIPPDVKLCASAREVADYFQKLMAMRATLPFEIDGMVAKVNDRGM
QEALGYTSRAPRWALALKFPAHQTRTRLNAIRIQVGRTGVLTPVAELEPVELAGVVVSNA
TLHNKGYIAERDLRVGDTVLIQRAGDVIPQVLSADLEQRPDNAEPFTFPDTCPVCESPAV
EDGERVVCTNPACPAKTVQRLIHFVSKAGLDMEGVGKQWVRKLAEDGVLNTPADLFTLKK
TDLLKYERMGDKSAENFIKAIQKAKEVAPLWRLIAGLGIRHIGEQAARALAARFKDLDAL
FASTLDELTELDGIGGIMAESILDFRVDASNRAMIEQFKEAGLHPEGGPAAAASDDAPLA
GKVFLFTGTLPVTRDEAHAMVEARGGVPVKSISKKVDYLVAGEKAGSKVAKAEKLGIEVI
DFAAFKALLEGKTAARQKSLLDF
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggttcctgacagcgttgccgagcgcgcggcctttctgcgcgaaaaaatcgaatatcac
aaccaccgttactacgtcctggacgatcccgagatatcggatcaggagttcgacgtcctg
ttccgcgaactggccgccatcgaggccgagcatcccgagctggacgaccccaactccccg
accaagcgggtgggcggcgagcccgccgaggggttcatcccctacgagcacgccctgcgg
ctgtactccctggacaacgccatggacctggacgcctggtacgccttccatgagcgcgtg
gccaagggcgtgggcacctccgacgtcgcctattgggccgaccccaagatggacggcctg
gccctggaagtcatttacgagaacgggcggtacgtgcgcggtgccacgcgcggcgacggc
ctggtgggcgaggacgtgaccggcaacatgcgcacggtcatgaacctgcccatgaccctc
cacggcggcgacgtccccgaactgatcgaggtgcgcggcgaggtgatcatgtccaacaag
gactttgcggccctcaacgcgcgccaggaggagaagggcgacaaggtcttcgccaacccg
cgcaacgccgcggccgggaccatccgccagctcgaccccaaagtggccgcttcgcgcccc
ctgcgtttcatggcctacggcgttggccgggtgcagtgggccggccggggagccgactgg
gccacccagcaggagctcatggaagggctgcgcggcctcgggttcgccattccgcccgac
gtgaagctgtgtgcttcggccagggaagtggccgactatttccagaaactgatggccatg
cgggccacgctgccgttcgagatcgacggcatggtcgccaaggtcaacgatcgcgggatg
caggaggcactcggctatacctcccgcgctccgcgctgggccctggccctcaagtttccg
gcgcaccagaccagaacacggctcaacgccatccgcatccaggtgggccgcaccggcgtg
ctcacccccgtggccgaactcgagcccgtggaactggcgggcgtggtggtctccaacgcc
accctgcacaacaaggggtacatcgcggagcgcgacctgcgcgtcggcgatacggttctc
atccagcgggcgggcgacgtcatcccgcaggtcctgtccgccgacctggagcaacggccc
gacaacgccgaacccttcacctttcccgatacctgtccggtctgcgagagtccggccgtg
gaggacggtgagcgggtggtctgcaccaatcccgcctgcccggccaagaccgtgcagcgg
ctcatccatttcgtgtccaaggcgggcctggacatggagggcgtgggcaagcagtgggtc
cgcaagctggccgaggacggcgtcctgaacaccccggccgacctcttcaccctgaagaag
accgacctgctcaagtacgagcgcatgggcgacaagtcggcggaaaatttcatcaaggcc
atccaaaaagccaaggaggtggcccccctgtggcggttgatcgccgggctcggcattcgc
cacatcggcgagcaggccgcgcgcgctctggccgcccggttcaaggatctcgacgcgctt
tttgcctccactctcgacgagttgaccgagctcgacggcattggcggcatcatggccgaa
tccatcctcgatttccgggtggacgcctccaaccgggcgatgatcgagcagttcaaggaa
gcgggccttcatcccgagggcggcccggccgccgccgcgtccgacgacgcaccccttgcc
gggaaggtcttcctgttcaccgggaccctgcccgtgacgcgcgacgaggcccacgccatg
gtcgaggcgcgcggcggcgtgccggtcaagtccatctccaaaaaggtggactacctggtg
gccggcgaaaaggccggttccaaggtcgccaaggccgaaaagctgggaattgaagtcatt
gacttcgccgcctttaaagcattactcgaaggcaagaccgcagctaggcaaaagtctctt
ctggacttttaa
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