Paramacrobiotus metropolitanus: 129587578
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Entry
129587578 CDS
T09028
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pmeo
Paramacrobiotus metropolitanus
Pathway
pmeo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
129587578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmeo03400
]
129587578
Enzymes [BR:
pmeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129587578
DNA repair and recombination proteins [BR:
pmeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
129587578
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
PTCB-BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
129587578
NCBI-ProteinID:
XP_055337355
LinkDB
All DBs
Position
Unknown
AA seq
942 aa
AA seq
DB search
MAATAKSSVADTIQFRELAALCDTLAKLPVKEKKRSTLALFLKRWRNEYDRIYPNHPQPP
PETFFPFLRLLMPWADKERPVYGIKENTLARLYIEELGLTPSGEPAQQLLHWKKNKPRNA
GSKDDVSDFAGVAYYVLQNRLHKEGEISVEAVNNHLNNIAEANAIGGQERKDTIKMSLHT
LLRRTDPLEQKWLIRMIMKDLKFGMGEDAILNVFHPDAKDLYDVTSSISTVCTKLHDPTL
RLSEIEVSLFAPVRPMLAETWNPEKLRSALKGGVYYAEIKYDGDRCQIHKNGKEFRYFSR
GGNDNTNVLGSSASEGTLTQHIADCFRPDLDNFIIDGEIVAYGLKEKCICTKAESYSIKN
LTGETGYQVCFVAFDVLLTNNKTVTALPLRQRVEILKDMFQEDEGRLYLARRKEVSTPDE
CYEFLNEAIDRNEEGIMLKDPSSVYKPNARSAGWWKVKPEYVDSLSDQLDVLVVGAYYGT
GRRSAGPSHFLLAVAQDPETPGEKPTKFLSFSKVGSGYTYKELDEMGARLNPHFKKWTKT
SKPEYLQLAPGEKNRADLWVEPENSFIVTVSAAQVLDSDQFATKCTLRFPRMKEPRYDKP
WFECLTVSQLQKLKEETSGRLGGRNITDEDVGDGAGKKRPRVNKTVIRLAEQFRPADLAE
IQAESGIFTGKSFYVADGDELHSKQDLERIIAENGGTCVQSPDTGTFCIVCRKLTIHVRN
AIRRLPVDVVYPSWIVRCVQEKKLCVWQASDLLHAKPATKNLINSAFDDWGDSYTEDVTV
EQVENLFTTLLGKVEPIERDVLAEFEQEYFPGVKLPGIFRLINAHIDKFQEFNDESTPSA
TKTILGVAGDLIEILGGEISDELSGKHISHVVVAANGSSGRLERLKAANHSRKRKFHIVT
EKWVFDSISREKILDEKGYVVRDYVQRPAPVQQSAFDGLFDV
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgacagcgaaatcctccgtagctgacactattcagtttcgggaactggctgca
ctatgcgacacattggcgaagttgcccgtgaaggagaagaagcgcagcaccctcgctctg
tttctcaaacgatggcgaaacgagtacgatcgtatctatcccaatcatccgcagccaccc
ccggagacgttctttccctttctccgtttgctgatgccgtgggccgacaaggagcgaccc
gtgtacgggatcaaggagaacacgctggccaggttgtacatcgaagaactgggactgaca
cccagtggagaaccggcgcagcagttactgcactggaagaagaataaacccaggaatgcc
ggaagtaaagatgatgtgtccgattttgccggagtggcttattatgtcctgcagaatcgt
ctgcacaaagaaggagaaatcagtgtggaagctgtaaataatcacctcaacaacattgcg
gaagcgaatgctatcggcggtcaggaacgaaaagatacgataaaaatgtctttacataca
ttgctacgaagaacggatcccttggaacagaaatggttaatacggatgataatgaaggat
ttgaagttcggaatgggtgaagatgccattttgaatgttttccatccggatgccaaggat
ctgtacgatgttaccagcagcatctccacggtttgtacaaaattgcacgatcccacgctt
cgcctaagtgaaattgaagtgtccctcttcgctcctgtgcgacctatgctggcggaaaca
tggaatcctgaaaaactgcgaagtgcgctgaaaggcggagtctattatgcggaaatcaag
tatgacggcgaccgctgtcagatccataaaaacggaaaagaatttcgctatttttctcga
ggcggaaacgacaatacaaacgttttgggatcatcggcgtctgaaggtacattgacgcag
cacattgctgactgttttcgcccagatctggataatttcattatcgatggggaaattgta
gcgtacggattgaaggaaaagtgcatctgtaccaaagcggaaagctactcgataaaaaac
cttacgggcgagactggatatcaagtgtgcttcgtagcctttgatgtgttgctcaccaat
aataagacagtaactgcccttcctctacgccaacgtgtagaaatattgaaggacatgttc
caagaggacgaaggacgcttgtatttagcaaggcggaaagaggtgtccacaccagatgaa
tgttatgagtttcttaacgaagccattgatcggaacgaggagggtattatgctaaaagat
cccagctccgtgtataagcccaacgcacggagcgctggctggtggaaagtgaagccggag
tatgtggacagcttgtccgatcaactagatgtactggttgtcggtgcttattacggtacg
ggacgccgcagtgcagggccttcgcattttctgctcgctgtcgcgcaggatcctgaaact
cccggcgaaaagccgacaaagttcctctcattttccaaagtgggcagcggttatacatac
aaagaactggatgagatgggcgcccgattgaatccgcatttcaagaaatggacgaaaacc
agtaaaccggaatatctacaattggcgccaggagagaagaatcgagcggatttatgggtt
gaaccggagaattcttttatcgtgacggtcagtgcagcgcaggtgctggattcggatcag
tttgccacgaaatgcacattgcgcttcccacgaatgaaggagccacgttatgataagcca
tggttcgagtgtctgaccgtttcccaactccagaaactgaaagaagagacgagtggacgc
ttgggtggtcgtaatattaccgacgaggatgtgggcgatggagcagggaagaagcgtccc
cgtgttaacaaaacagtaatacgtctagccgaacaattccgtccagctgatctcgcggaa
attcaagcggaaagcggaatattcaccggcaagtccttttatgttgccgatggagatgag
ctacatagtaaacaggatctcgagcggattattgcagagaacggtggtacctgtgtacag
agtcccgatacaggaacattctgtatcgtctgtcggaaactgaccatacatgtgagaaac
gcaatcaggcggctgcctgttgatgttgtttatccttcctggattgttcgatgtgtacaa
gaaaaaaagttgtgtgtttggcaagccagtgatctcttgcatgccaaacccgcaacgaag
aatttgattaattcagctttcgacgactggggtgatagctatacggaagatgtgacggtg
gagcaagtagaaaatttattcactactcttttgggaaaagtagagccgattgaaagagac
gtcctggcggaatttgagcaagaatattttcccggtgtaaaattgcccggaattttccgt
ttaatcaatgcacacatcgacaaatttcaagaattcaatgatgaaagtactcccagtgcg
acgaagactatccttggcgttgctggagatttaattgagattctcggtggagaaatcagt
gatgagctgtctggcaagcacatcagccatgttgtcgttgctgctaacggatcttcagga
aggttagagaggctaaaggccgctaatcacagtcgaaagagaaaattccacattgttacg
gagaaatgggtgtttgacagcatttctcgtgaaaaaatcctggatgaaaagggttatgtc
gtccgtgattatgtgcagaggccggcgcccgtacaacaatctgccttcgatggcctcttt
gatgtttga
DBGET
integrated database retrieval system
