Paramacrobiotus metropolitanus: 129599268
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Entry
129599268 CDS
T09028
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pmeo
Paramacrobiotus metropolitanus
Pathway
pmeo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
129599268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmeo03400
]
129599268
Enzymes [BR:
pmeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129599268
DNA repair and recombination proteins [BR:
pmeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
129599268
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
BRCT_3
LIG3_BRCT
DNA_ligase_IV
RTT107_BRCT_6
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
129599268
NCBI-ProteinID:
XP_055353436
LinkDB
All DBs
Position
Unknown
AA seq
945 aa
AA seq
DB search
MDSSAFGPTITIAAKTPFKTLVCLLHSLRAITGTSQRNRRKAVFDSYLETWRKNYECIYG
VAPSSNGSDTFFPFLRLLLPKHDERPTFSLQEFTLSKWFRIVFNLSSDCTTSQTLTAWRR
HISKRENVGDYAAVAANALDRHLVKPKKKDLSVEEINNCLDALAEANSLIGIPRKEKYQS
TFTFLLQRIDKQELEWLIRILLRDLKLGISFEVIMDLFHKDAKDMFAAHAKLSVVCQKLC
DNKVRKPQYGVQLMEPLLPMRAELWDFSKIDAALRITPLIAEIKYDGERFQIHKDGKRFR
FFSRPGNDYTAVLGETATEGTLLQYIAHCFRPHAESFIIDGELCPYYTKKRCFGSKADIN
WMKKLTGSSGCQLCFVAFDILHLNGQVLMDRPWRDRVEILKGLFAEEEGRLVYSIRREFS
IIDECMDFLNEIANTEEGLIIKDPRSVYQPKIQSPYWWKLKPEFVGSLCEQLDLLIIGAY
RGHGNSVAGNFLLGVIDANNGGADEQPKRFFSICNIAVGFKRTELESLVLKLIPHLRPWD
NHSQPDFIVLGSREACRPDYWVHPNVSAVVQVRASQLIRNDGFGAGFALRFPRVVQIRSD
KNWSDTTTLSDINRIDRERNRRLGAVNVNVDDLRHPARSFSFRRSSEGSRLPVHEWFVTP
KDLTIKSGLFMGKEFCVTTGDDTGEKERIQRLILENGGTCTLHRSNTTFCVISTKVCTKV
RNMVIRDPLDIVRPTWIERCIASGSILPWHPDDLLYSKPRTSMVVKRSYDENDDSFTEDV
DVDEVERLFSKMDAKLLAETISKDKLDDFVMEKFCSIFWANELILFRGLSFFVLNRQSSI
MLEVVADAIKHFGGLVKLNMEEQPSHVVVQRDVNSDDVDALKTTCHKSKIRVVAWTWVID
CISELRLLDEREYYPHEAFTKKIIPSVISVFDCLSDPVAPVIPVV
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggactcctcagcatttgggcctaccattaccatcgcagcgaaaacaccgttcaagacg
ctggtttgcttattgcactccttaagagccattactggaacatcgcaacgtaatcgtcgg
aaagctgtttttgactcgtatctggaaacttggagaaagaattatgagtgtatctacgga
gttgctccgagttctaacggatccgatacatttttccctttcttgcgcttgttactgccg
aaacacgatgagcgccccacattttccttgcaagaattcacactgagcaaatggttccgg
attgtttttaatttgagtagtgattgtactacttcgcagacactgactgcttggcgacgg
catatttccaaacgggaaaatgtaggcgactatgccgccgttgcggcaaacgcgctggat
cggcatttagtgaaaccgaaaaagaaggatttgtctgtggaggagatcaataattgtctg
gatgcgcttgcagaggctaatagccttataggaattcctcgcaaagagaaataccagagc
accttcacatttttgctgcagcgaatcgacaagcaagaactggaatggctaattcgcatt
ctgctcagagatctaaaactgggaataagtttcgaagtgattatggacctttttcacaag
gatgccaaagacatgtttgcagcccacgccaaactttcggttgtttgtcagaaactatgt
gacaacaaagtgcgaaagccgcagtacggtgttcagctgatggagccattgctgcctatg
cgtgcagaattatgggacttcagtaaaatcgacgctgcgctcaggatcactccgttgata
gcggaaattaaatacgacggtgaacgttttcagatccataaagatggcaagcgattccgg
tttttttctagacccggaaatgattacactgctgttttgggagaaactgctaccgaaggg
acgctgctgcagtatattgcgcactgttttcgaccacatgcggaaagtttcataatagat
ggtgagctgtgcccgtactatacaaagaaacgttgttttgggtctaaagcagatattaac
tggatgaaaaaactgacgggttcatccggatgccagttatgcttcgtcgcttttgatatc
ctacacttaaacggccaggttttgatggatcgcccatggcgagaccgagttgaaatactt
aaaggactgtttgcagaggaggaagggcgtttagtctactcaattcgccgggagttttcc
atcatcgacgaatgcatggattttcttaacgagatcgcgaatacagaggaaggtttgata
atcaaagacccgcgatctgtttatcaacccaaaattcagtcgccctattggtggaaattg
aagccagaatttgttggaagtttgtgtgaacaattggacttactcattattggagcgtac
cgaggacacggaaattcggttgccgggaattttctattgggtgtgattgatgccaacaac
ggcggagcggatgagcaaccaaaacgcttcttctccatttgcaatattgccgttggattc
aaaagaacagaactggaatcgttggtattgaaattaattccacatttgcggccatgggat
aatcattcccaaccagattttattgtgctgggtagccgagaagcttgtaggccagattac
tgggtacatccaaatgtatcggctgtcgtgcaggtgcgagcgtcacaacttattcggaat
gatggttttggtgctggttttgccctacgatttcctcgtgtggtacaaattcgatccgat
aagaactggtctgataccacaacattatcagatataaaccgcattgatcgggaaagaaac
aggcgattgggcgctgtaaacgttaatgtagatgacctgcgacatccagcacgttcattc
tcttttcgaagatcgtcagaaggatcgcggctgcccgtccacgaatggtttgttactccg
aaggatttaaccataaaatccggtttattcatgggtaaggagttttgcgtgactaccgga
gatgataccggtgagaaggaacggatccagcgtctgatcttggagaatggaggaacatgt
acgctgcatcgatcaaatactactttctgtgtaatcagcacaaaggtctgcacaaaagtg
cgaaacatggtgatacgtgatccattagatatcgttcgaccgacttggattgaacggtgt
attgcatccggaagtatactaccatggcatcccgatgacctactgtacagtaagccaaga
acgtctatggttgtgaagaggtcgtatgatgaaaatgacgacagttttacggaagatgtt
gatgttgacgaagtcgagaggttgtttagcaaaatggatgctaaattgctggccgaaacc
atttcgaaggataagctcgatgatttcgtaatggagaagttctgcagcattttctgggct
aatgaactgatcttgtttcgtgggttgagttttttcgtactcaaccggcagtcttcaatc
atgctagaagttgtggcggacgcaatcaagcacttcggtggcttggtcaagttaaatatg
gaagaacaaccaagtcatgttgtggtccaacgggatgtgaattcggatgatgttgacgca
ctgaagacaacttgccataaaagcaagattcgtgttgtggcatggacttgggtgatcgac
tgcattagtgagctccgcttactggatgagcgcgaatactatcctcatgaggcatttacc
aaaaagataataccttctgtgatttctgtatttgattgtttaagtgatcctgttgcacca
gttattcccgtggtttaa
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integrated database retrieval system
