Paraglaciecola mesophila: FX988_00059
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Entry
FX988_00059 CDS
T06389
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmes
Paraglaciecola mesophila
Pathway
pmes03030
DNA replication
pmes03410
Base excision repair
pmes03420
Nucleotide excision repair
pmes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FX988_00059
03410 Base excision repair
FX988_00059
03420 Nucleotide excision repair
FX988_00059
03430 Mismatch repair
FX988_00059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmes03032
]
FX988_00059
03400 DNA repair and recombination proteins [BR:
pmes03400
]
FX988_00059
Enzymes [BR:
pmes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FX988_00059
DNA replication proteins [BR:
pmes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FX988_00059
DNA repair and recombination proteins [BR:
pmes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FX988_00059
NER (nucleotide excision repair)
GGR (global genome repair) factors
FX988_00059
MMR (mismatch excision repair)
DNA ligase
FX988_00059
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FX988_00059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
DZR_2
MazE_antitoxin
RNA_ligase
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QHJ09851
UniProt:
A0A857JFV5
LinkDB
All DBs
Position
71026..73059
Genome browser
AA seq
677 aa
AA seq
DB search
MSNALSPAQRLTQLINIINEYNYQYYVQDNPSVPDAEYDRLMHELLDIEKAHPDLRSPDS
PSQKVGGAALSAFEQVEHEVPMLSLDNAFDEDDMIAFEKRIKDRLKITSEISFSCEPKLD
GLAVSILYENGKLVRAATRGDGRVGENITTNVRTIANVPLRLRGEDFPQRLEVRGEVIMT
RAGFETLNVAQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVENVQQPL
AITHSGRLKQLSDWGLPLSKELEVAQGAKECLTYFHKIGALRSGLSYDIDGVVFKVDEIA
MQQELGFVARAPRWAIAHKFPAQEEMSTLLDVEFQVGRTGAVTPVARLAPTFVGGVTVSN
ATLHNQDEIDRLGIKIGDSVIIRRAGDVIPQIVAIVADKRPDDGTDIVFPTMCPVCGSAV
EKLEGEAVARCTGGLYCKAQRKEAMKHFASRKALDIDGLGDKLIEQLVDADMVKSPADFF
ALDIAPLASMERMGEKSAVNLVNSLEKSKKTTLAKFLYSLGIREVGEATAQNLALHFLTL
EAIKQADLEALQGVSDVGVIVAQHVFNFFQEEHNLEVISALQEAGVYWPKIEKIAVDQLP
LAGQVYVLTGTLNVMDRNQAKAKLQSLGAKVSGSVSAKTNCLVAGEKAGSKLTKAQDLGV
KVMNEDEMLAMFAELDE
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatgctttgtcgcctgctcaacggctgacgcaacttatcaacatcatcaatgaa
tacaactatcagtattatgtgcaggacaacccctcggtgccggatgccgagtatgaccgt
ttaatgcatgaactgcttgatattgagaaagctcaccctgatttacgtagccccgattcc
ccctcacaaaaggtcggcggtgcagcgcttagcgcgttcgagcaagttgaacatgaagta
cccatgttgtctcttgataatgcctttgatgaagacgatatgattgcctttgaaaagcgt
attaaagaccgtttaaagataacaagcgaaattagttttagctgtgaacccaagcttgac
ggcttagccgtgagtattttgtatgaaaatggaaagttggtacgtgccgcaacgcgaggt
gatggtcgggtaggtgagaacattactaccaatgttcgtactatcgctaacgtcccatta
cgtttacgcggtgaagatttcccccagcgtttagaagtacgtggtgaggtgatcatgacc
cgagcaggcttcgaaacgttaaacgtggcgcaaattaaaaagggtaaaaaaccatttgtt
aaccccagaaatgccgctgcaggcagtttgcgtcagcttgaccctaaaatcacagctgca
cgacctctcttattttacagttattcgttaggtttagttgaaaacgtacagcaaccttta
gctatcacccattctgggcgcttaaaacaactcagcgattggggtttaccccttagtaaa
gagttagaggtcgctcaaggtgcaaaagagtgcctgacctattttcataaaatcggtgca
ctgcgcagtgggctaagctatgacattgacggtgtcgtgtttaaggttgacgaaattgca
atgcaacaagagctgggctttgttgctcgggcaccacgttgggcgattgcccataaattt
cctgctcaagaagaaatgagcaccttgttagacgtcgaatttcaggtcggcagaactggc
gcagttacgccggttgcgcgtctcgctccgacgtttgtcggcggtgtaacggtatctaat
gccacattgcacaatcaagatgagatcgatcgcttagggataaaaataggcgatagcgtg
atcattcgtcgcgcaggtgacgttatcccgcaaatcgtcgctattgtggctgataaacgc
cctgatgatggcacagacattgtgttcccaacaatgtgcccagtgtgtggctctgcggta
gagaaactcgaaggagaagcggttgcgcgttgcacgggaggcttgtattgcaaagcccaa
cgtaaagaagccatgaagcattttgcctcacgtaaagcgttggatattgacggtttaggc
gacaaattgattgaacaattagttgacgctgacatggttaaaagcccagcagattttttt
gcgctagatattgcgcccttagcaagcatggagagaatgggggaaaaatcagcggtaaat
ttggtgaactccctagagaaaagtaaaaaaaccacgttagccaaatttctatattccctt
ggtattcgcgaagtcggcgaagcgacagcacaaaatttagcactgcattttctaaccctt
gaggcaataaaacaagctgatctcgaagcattgcaaggggtatccgacgttggggtgatt
gtggcccagcatgtttttaattttttccaagaagaacataaccttgaggttatttcggcg
ctacaagaagccggcgtgtattggcctaaaattgaaaaaatagcggtggatcagttaccc
cttgcggggcaggtgtatgtactaaccggaacactgaatgtgatggatcgcaatcaggct
aaagctaagttgcagagcctaggcgcaaaagtgtccggtagtgtttcagctaaaacaaac
tgcttagtggcaggggaaaaagccggttcaaagttaaccaaagcacaagatttgggtgtg
aaagtgatgaacgaagatgaaatgctcgctatgtttgctgagcttgatgagtaa
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