KEGG   Paraglaciecola mesophila: FX988_00059
Entry
FX988_00059       CDS       T06389                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pmes  Paraglaciecola mesophila
Pathway
pmes03030  DNA replication
pmes03410  Base excision repair
pmes03420  Nucleotide excision repair
pmes03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pmes00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FX988_00059
   03410 Base excision repair
    FX988_00059
   03420 Nucleotide excision repair
    FX988_00059
   03430 Mismatch repair
    FX988_00059
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmes03032]
    FX988_00059
   03400 DNA repair and recombination proteins [BR:pmes03400]
    FX988_00059
Enzymes [BR:pmes01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     FX988_00059
DNA replication proteins [BR:pmes03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     FX988_00059
DNA repair and recombination proteins [BR:pmes03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     FX988_00059
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     FX988_00059
   MMR (mismatch excision repair)
    DNA ligase
     FX988_00059
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      FX988_00059
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT Nlig-Ia HHH DZR_2 MazE_antitoxin RNA_ligase Zn_ribbon_NUD
Other DBs
NCBI-ProteinID: QHJ09851
UniProt: A0A857JFV5
LinkDB
Position
71026..73059
AA seq 677 aa
MSNALSPAQRLTQLINIINEYNYQYYVQDNPSVPDAEYDRLMHELLDIEKAHPDLRSPDS
PSQKVGGAALSAFEQVEHEVPMLSLDNAFDEDDMIAFEKRIKDRLKITSEISFSCEPKLD
GLAVSILYENGKLVRAATRGDGRVGENITTNVRTIANVPLRLRGEDFPQRLEVRGEVIMT
RAGFETLNVAQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVENVQQPL
AITHSGRLKQLSDWGLPLSKELEVAQGAKECLTYFHKIGALRSGLSYDIDGVVFKVDEIA
MQQELGFVARAPRWAIAHKFPAQEEMSTLLDVEFQVGRTGAVTPVARLAPTFVGGVTVSN
ATLHNQDEIDRLGIKIGDSVIIRRAGDVIPQIVAIVADKRPDDGTDIVFPTMCPVCGSAV
EKLEGEAVARCTGGLYCKAQRKEAMKHFASRKALDIDGLGDKLIEQLVDADMVKSPADFF
ALDIAPLASMERMGEKSAVNLVNSLEKSKKTTLAKFLYSLGIREVGEATAQNLALHFLTL
EAIKQADLEALQGVSDVGVIVAQHVFNFFQEEHNLEVISALQEAGVYWPKIEKIAVDQLP
LAGQVYVLTGTLNVMDRNQAKAKLQSLGAKVSGSVSAKTNCLVAGEKAGSKLTKAQDLGV
KVMNEDEMLAMFAELDE
NT seq 2034 nt   +upstreamnt  +downstreamnt
atgtctaatgctttgtcgcctgctcaacggctgacgcaacttatcaacatcatcaatgaa
tacaactatcagtattatgtgcaggacaacccctcggtgccggatgccgagtatgaccgt
ttaatgcatgaactgcttgatattgagaaagctcaccctgatttacgtagccccgattcc
ccctcacaaaaggtcggcggtgcagcgcttagcgcgttcgagcaagttgaacatgaagta
cccatgttgtctcttgataatgcctttgatgaagacgatatgattgcctttgaaaagcgt
attaaagaccgtttaaagataacaagcgaaattagttttagctgtgaacccaagcttgac
ggcttagccgtgagtattttgtatgaaaatggaaagttggtacgtgccgcaacgcgaggt
gatggtcgggtaggtgagaacattactaccaatgttcgtactatcgctaacgtcccatta
cgtttacgcggtgaagatttcccccagcgtttagaagtacgtggtgaggtgatcatgacc
cgagcaggcttcgaaacgttaaacgtggcgcaaattaaaaagggtaaaaaaccatttgtt
aaccccagaaatgccgctgcaggcagtttgcgtcagcttgaccctaaaatcacagctgca
cgacctctcttattttacagttattcgttaggtttagttgaaaacgtacagcaaccttta
gctatcacccattctgggcgcttaaaacaactcagcgattggggtttaccccttagtaaa
gagttagaggtcgctcaaggtgcaaaagagtgcctgacctattttcataaaatcggtgca
ctgcgcagtgggctaagctatgacattgacggtgtcgtgtttaaggttgacgaaattgca
atgcaacaagagctgggctttgttgctcgggcaccacgttgggcgattgcccataaattt
cctgctcaagaagaaatgagcaccttgttagacgtcgaatttcaggtcggcagaactggc
gcagttacgccggttgcgcgtctcgctccgacgtttgtcggcggtgtaacggtatctaat
gccacattgcacaatcaagatgagatcgatcgcttagggataaaaataggcgatagcgtg
atcattcgtcgcgcaggtgacgttatcccgcaaatcgtcgctattgtggctgataaacgc
cctgatgatggcacagacattgtgttcccaacaatgtgcccagtgtgtggctctgcggta
gagaaactcgaaggagaagcggttgcgcgttgcacgggaggcttgtattgcaaagcccaa
cgtaaagaagccatgaagcattttgcctcacgtaaagcgttggatattgacggtttaggc
gacaaattgattgaacaattagttgacgctgacatggttaaaagcccagcagattttttt
gcgctagatattgcgcccttagcaagcatggagagaatgggggaaaaatcagcggtaaat
ttggtgaactccctagagaaaagtaaaaaaaccacgttagccaaatttctatattccctt
ggtattcgcgaagtcggcgaagcgacagcacaaaatttagcactgcattttctaaccctt
gaggcaataaaacaagctgatctcgaagcattgcaaggggtatccgacgttggggtgatt
gtggcccagcatgtttttaattttttccaagaagaacataaccttgaggttatttcggcg
ctacaagaagccggcgtgtattggcctaaaattgaaaaaatagcggtggatcagttaccc
cttgcggggcaggtgtatgtactaaccggaacactgaatgtgatggatcgcaatcaggct
aaagctaagttgcagagcctaggcgcaaaagtgtccggtagtgtttcagctaaaacaaac
tgcttagtggcaggggaaaaagccggttcaaagttaaccaaagcacaagatttgggtgtg
aaagtgatgaacgaagatgaaatgctcgctatgtttgctgagcttgatgagtaa

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