Phototrophicus methaneseepsis: G4Y79_13700
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Entry
G4Y79_13700 CDS
T07940
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmet
Phototrophicus methaneseepsis
Pathway
pmet03030
DNA replication
pmet03410
Base excision repair
pmet03420
Nucleotide excision repair
pmet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G4Y79_13700 (ligA)
03410 Base excision repair
G4Y79_13700 (ligA)
03420 Nucleotide excision repair
G4Y79_13700 (ligA)
03430 Mismatch repair
G4Y79_13700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmet03032
]
G4Y79_13700 (ligA)
03400 DNA repair and recombination proteins [BR:
pmet03400
]
G4Y79_13700 (ligA)
Enzymes [BR:
pmet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G4Y79_13700 (ligA)
DNA replication proteins [BR:
pmet03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G4Y79_13700 (ligA)
DNA repair and recombination proteins [BR:
pmet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G4Y79_13700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G4Y79_13700 (ligA)
MMR (mismatch excision repair)
DNA ligase
G4Y79_13700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G4Y79_13700 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
BRCT_2
Nlig-Ia
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
QPC80763
UniProt:
A0A7S8E5H4
LinkDB
All DBs
Position
complement(3179055..3181325)
Genome browser
AA seq
756 aa
AA seq
DB search
MTKEIAERAAQLREELNHHIYRYNVLNDPIITDAEYDKLYHELAHIEQENPELQTPDSPT
QRVGSDLSEDLPKIAHPGPILSLSNAFSEADLRRWEERNLRMMSAGTTFDYVLEPKLDGL
SIVLTYVDGILTTAATRGNGEIGDDVTANIRTVRTIPLRIPSRADGPSAPPRLVVRGEVL
FLKEDFERVNEEQDAQGLPRYVNARNTASGSLKQKDSRVTATRPLTAYIYDIVDSDGIVL
DNEWDTLGYMRDLGFNVIPHAEYYPTLSDIIQQIPTWESRRHALPFEIDGLVLKINKVAY
RRELGVVGKDPRGATAFKFPAEEATTKLLDVVPNIGRTGKVTPTASLDPVFLSGVTVSNA
SLHNYDLINQLDIRMGDMVIIKRSGEVIPYVIGPVTGARDGSETPIEPPQYCPFSGDELV
RPAGAVDLFCPNPRCPERVFRSLEFFVSRGAMDIDGMGPETVKALIDAGLISDEADIFYL
TAEPILEMEGFGDKKVDNLMQSIETAKHRSLARLLSSLGIDGIGSVAANLLASHFQNIDD
LIALSDRATAASQAFKECVAPLLQQPTDMDVDKRRAVTRLSRPLIELAPRYLDAADLENR
LSRLLKPVLSDAPENTPDISIIATQLGTLIDAARPLLTIDGLGPVLVHNIINWFADDYHK
ALLQKMRDAGVNMEAETIEQASNTFDGLKFVITGTMTVPRDDIKALIESHGGKVSGSVSK
KTDYVVVGDSPGSKADKAQQLGVTILSEDDLRAMVK
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaggagatcgccgagcgcgccgctcagctccgagaagaattgaaccatcatatt
tatcggtacaatgtgcttaatgaccccatcatcacggacgccgaatacgataaactctat
cacgaattagcacacatcgagcaggaaaacccggaattacagacgcctgattcaccaacc
cagcgcgtcggcagcgatctgagtgaagacttgccgaagatcgcacatcctggccctatc
ctgagcttatcaaacgcctttagcgaagccgacttgcgtcgatgggaagaacgcaactta
cgcatgatgagtgccggcactacttttgactatgtgctggaacctaagcttgatggcctc
agcattgtgctcacttacgtggatggcatcctgacgaccgcggcaacacgtggcaatggt
gaaatcggcgatgatgtgacagccaacattcgcactgtgcggactatcccgctgcgcatc
ccctcacgtgctgatgggccatctgcaccgcctcggttagtcgtccgtggcgaagtatta
ttcctgaaagaagacttcgagcgcgtcaacgaagagcaggacgcccagggcttgccacgg
tacgtcaacgcacggaacaccgcctctggctctcttaagcaaaaagactcccgcgtgacg
gcaactcgtcccctgacagcatatatttacgatattgttgatagcgatggcattgtgttg
gataacgagtgggatacactgggatatatgcgggatttaggcttcaacgttatcccacat
gcagagtattatcccaccttatccgacattatccagcaaatacccacgtgggaatcccgc
aggcacgcgttaccctttgaaattgatggattagtcctcaaaatcaacaaagtggcctat
cggcgggaattaggcgtcgtgggtaaagacccccgaggcgcaacggcctttaagttcccg
gcagaagaagccaccaccaagctccttgatgtggtgcccaatattggtcgtacaggcaaa
gttacgccaacagcttcgcttgatcctgtttttttgagcggcgtcaccgttagcaatgcc
agcctacacaattatgatctcatcaaccagctcgatatccggatgggtgatatggtcatt
attaagcgctctggcgaagtcattccctacgttattggcccagtcacgggcgcacgggat
ggcagtgaaacgccgattgagccgccacaatattgccccttctctggcgatgaactggtc
cggcccgctggtgcagtcgatctattttgtcccaatccacgctgtccggagcgcgtcttc
cgtagtttggaattcttcgtctcacgcggggcgatggacattgacggtatgggaccggaa
actgtaaaagccttgatagatgcgggcctcatcagcgatgaagccgatattttctaccta
acggctgagcctattctggaaatggaaggcttcggcgataaaaaggtcgacaatctgatg
cagtcgatcgaaacagctaagcaccgctccctggcgcggttactctcatcactagggatc
gatggcatcggcagcgtcgcggcgaacttgttagcttctcacttccagaatattgacgat
ttaatcgccctatcggaccgtgctacagcagcaagtcaggctttcaaagaatgtgttgcg
ccgctgctacaacagccaacagatatggatgtcgataaacgccgcgctgttacgcgcctc
tcaaggccattgattgagttggccccacggtatctggatgctgccgacctggaaaatagg
ctcagccgcctgcttaagcctgtgctgagcgatgcccctgaaaatacgccagatataagt
atcatcgccacacaattagggactctcattgatgctgcccggcccctgctcacaattgac
gggctcggccccgtgctggtgcacaatatcatcaactggttcgcagatgattatcataaa
gcgttgctgcaaaaaatgcgcgatgcaggcgtcaatatggaggcggaaaccatcgaacaa
gccagcaatacttttgacgggctaaagttcgtcatcactggcaccatgaccgttccgcgt
gacgacatcaaagccctgattgaatcgcatggcggcaaagtcagcggcagcgtcagcaaa
aagacagattatgtcgttgtaggggattcacccggttccaaagcagacaaagctcagcag
ctcggcgtgacgattctcagtgaggacgatctgcgcgctatggtcaaatag
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