Pseudoxanthomonas mexicana: H4W19_05800
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Entry
H4W19_05800 CDS
T06805
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmex
Pseudoxanthomonas mexicana
Pathway
pmex03030
DNA replication
pmex03410
Base excision repair
pmex03420
Nucleotide excision repair
pmex03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H4W19_05800 (ligA)
03410 Base excision repair
H4W19_05800 (ligA)
03420 Nucleotide excision repair
H4W19_05800 (ligA)
03430 Mismatch repair
H4W19_05800 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmex03032
]
H4W19_05800 (ligA)
03400 DNA repair and recombination proteins [BR:
pmex03400
]
H4W19_05800 (ligA)
Enzymes [BR:
pmex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H4W19_05800 (ligA)
DNA replication proteins [BR:
pmex03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H4W19_05800 (ligA)
DNA repair and recombination proteins [BR:
pmex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H4W19_05800 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H4W19_05800 (ligA)
MMR (mismatch excision repair)
DNA ligase
H4W19_05800 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H4W19_05800 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
VMAP-M8
CdiA_C_tRNase
Motif
Other DBs
NCBI-ProteinID:
QND81280
LinkDB
All DBs
Position
complement(1212871..1215225)
Genome browser
AA seq
784 aa
AA seq
DB search
MTPPTPAARIADLRRQLEDANYRYYVLDEPSIPDAEYDRLLRELEALEAAHPDLVTADSP
TQRVGNAPAGKFAEVRHAIPMLSLGNAFSDEEVQDFVRRIADRLKRPALRFSAEPKLDGL
AISLRYEGGAFVQGATRGDGATGEDVTLNLRTIKAIPLTLRGTGWPDVLEVRGEVYMPRA
DFETYNEYARKHGGKVLANPRNGAAGSLRQLDPRITAQRPLAFFAYGTGLVEGGELPDSH
SATLKQLRGWGFPVSSLSEVVEGVEGLLDYYRRIGEARDGLPFDIDGVVYKLDDGEGQRE
MGFVSRAPRWAIAHKFPAQEQMTVLESIEVNVGRTGAVTPWALMQPVHVGGVTVTRATLH
NADQVARLDVRNGDTVIVRRAGDVIPEVVGMVPERRPDGTVPWRMPSACPVCGSEIVREE
GEAVWRCSGELTCPAQRKETIIHFASRRAMDIEGLGERFVEDLSDLGFVQHVADLYKLTL
DDLLEMKRRVDERDGTTPETVKSGKVATKWAENLIEAIDRSRRTTLERFLFGLGIQHVGE
STAKALAHWFGDLQVIRRLPWPLFKQVPDIGGEVARSLGHFLDQPGNQQAIDDLLARGVV
IGDTHPPSGKLRAGLELATVLVDLEIPKVTRVRAEQLASAFPSVQALLDAPVHNFVTAGL
PSDAANAFATWLEDETNAQLLSRCGAALDELRAITPADVAVSAGPLDGKTVVLTGSLASM
SRDEAGEKLEALGAKVAGSVSKKTHLVVAGEAAGSKLAKAQELGIEIWDEAQLLAFLVQH
GSGA
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgccgacccctgccgcacgcatcgccgacctccgccgccagttggaggatgcc
aactaccgctactacgtcctggacgagcccagcatcccggatgcggagtacgaccgcctg
ctgcgcgaactggaggcgctggaggcagcgcatccggatctggtgaccgccgattcgccc
acccagcgcgtgggcaatgcgccggccggcaagttcgccgaagtgcgccatgccattccc
atgctctcgctgggcaacgccttcagcgacgaggaggtccaggacttcgtccgccgtatc
gccgaccgactgaagcgcccggcgctgcggttctcggctgagcccaagctcgacggcctg
gcgatcagcctgcgttacgaaggcggcgccttcgtgcagggcgccacccgcggcgacggc
gccaccggcgaggacgtcaccctcaacctgcgcaccatcaaggccatcccgttgaccctg
cgcggcaccggctggccggacgtgctggaagtgcgcggcgaggtgtacatgccgcgcgcc
gatttcgagacgtacaacgagtacgcccgcaagcatggcggcaaggtgctggcgaacccg
cgcaatggcgccgccggttcgctgcgccagctggacccgcgcatcaccgcgcagcggccg
ctggcgttcttcgcctacggcaccggcctggtcgagggcggggaactgccggattcgcac
tcggccacgctgaagcagctgcgcggctggggctttccggtcagcagcctcagtgaggtg
gtggaaggcgtggagggcctgctcgactactaccgtcgcatcggcgaggcgcgcgatggg
ctgccgttcgacatcgacggcgtggtctacaagctggacgacggggaagggcagcgcgag
atgggtttcgtctcgcgcgcgccgcgctgggcgatcgcgcacaagttccccgcgcaggag
cagatgacggtactggagtcgatcgaggtcaatgtcggccgcaccggcgccgtgacgccg
tgggcgctgatgcaaccggtgcatgtgggcggcgtgaccgtcacccgtgccaccctgcac
aacgccgaccaggtggcacgcctggacgtgcgcaacggcgatacggtgatcgtgcgccgc
gccggcgacgtgatcccggaggtcgtcggtatggtgccggaacgacgcccggacggcacc
gtgccgtggcggatgccgtcggcatgcccggtctgcggttctgagatcgtccgcgaggag
ggcgaggcggtgtggcgctgcagcggcgagctgacctgtccggcgcagcgcaaggagacg
attatccatttcgcctcgcgccgggcgatggacatcgagggcctgggcgaacgtttcgtc
gaggatctcagcgacctgggcttcgtgcagcacgtggccgacctgtacaagctgacgctg
gacgacctgctggagatgaagcggcgtgtcgacgagcgcgatggcaccacgcccgagacg
gtgaaatcgggcaaggtggcgaccaagtgggccgagaacctgatcgaggccatcgatcgc
agccgccggaccacgctggagcgcttcctgttcggtctgggcatccagcacgtcggtgag
agcaccgccaaggccctggcgcactggttcggcgacctgcaggtgatccgtcgcctgccg
tggccgctgttcaagcaggtgccggacatcggcggcgaagtggcgcgctcgctgggccac
ttcctcgaccagcctggcaaccagcaggccatcgacgacctgctggcgcgcggggtagtg
atcggcgatacgcatcccccttcgggcaagctgcgcgccggcctggagctggccacggtg
ctggtcgacctggagattcccaaggtcacgcgcgtgcgcgccgagcaactggcctcggca
ttcccgtcggtgcaggcgctgctggatgcgccggtgcacaacttcgtcaccgccggcctg
cccagcgatgcggccaacgccttcgccacctggctggaggacgagaccaacgcgcagctg
ctgtcgcgctgcggtgcggccctcgacgaactgcgggcgatcacgccggcggacgtggcg
gtgtccgccggaccgctggacggcaagaccgtcgtgctgaccggcagcctggcgtccatg
agccgcgacgaagccggggagaagctggaggcactgggcgccaaggttgccggcagcgtg
tcgaagaagacgcatctggtggtggccggcgaagccgccggctccaagctggccaaggcg
caggagctggggatcgagatctgggacgaggcgcagctgctggcgttcctggtgcagcac
gggagcggtgcgtga
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