Ectopseudomonas mendocina NK-01: MDS_0486 Help Entry MDS_0486          CDS       T01473                                  Name (GenBank) NAD-dependent DNA ligase LigB   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism pmk  Ectopseudomonas mendocina NK-01 Pathway pmk03030   DNA replication pmk03410   Base excision repair pmk03420   Nucleotide excision repair pmk03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pmk00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     MDS_0486    03410 Base excision repair     MDS_0486    03420 Nucleotide excision repair     MDS_0486    03430 Mismatch repair     MDS_0486  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pmk03032]     MDS_0486    03400 DNA repair and recombination proteins [BR:pmk03400]     MDS_0486 Enzymes [BR:pmk01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      MDS_0486 DNA replication proteins [BR:pmk03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      MDS_0486 DNA repair and recombination proteins [BR:pmk03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      MDS_0486    NER (nucleotide excision repair)     GGR (global genome repair) factors      MDS_0486    MMR (mismatch excision repair)     DNA ligase      MDS_0486   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       MDS_0486 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_OB DNA_ligase_aden HHH_5 HHH RecR_HhH Motif Other DBs NCBI-ProteinID:  AEB56517 LinkDB All DBs Position complement(520906..522600) Genome browser AA seq 564 aa AA seqDB search MKLMLMSLLLLPLTVLAEPCPNWADARAAMELGALSRQIAEWDDAYHNQGHSLVADEIYD QARGRLQAWHQCFPTALDNLPEPLAGSTGKLAHPVAQTGLRKLNDAAVAEWIASRSDLWI QPKVDGVAVTLVYRHGVLQHAVSRGDGRHGQDWTARARQLPGVPTRLPEPLDAVLQGELY WRLNEHVQSRDGGAGARGKVAGLMARQTLDQHEADAIGLFVWDWPDGPEQMPERLQALHR LGFSDSLQYTQALRSPDQASLWRQRWFDQPQPFASDGVVLRQGTRPSGERWQAEAPHWAI AWKYPASQALAVVQAVHFSIGRTGRITPILHLQPVDLDERRISRVALGSLQSWEKLDIRP GDQVSIRLAGLTIPRLDQVIWRSPERAVVHAPDPDQYHALSCWRLSAECRQQFLARLNWL AGKQGLNLNGLGPGTWSTLLASEQLDGLLDWLEFDSQRLQQLPGIGPRRASQLQQSFAQA QQRSLQQWLQALGAPPDLKLGAEDDWATLLTRNRAEWMQQPGMSQKSAERLLAFFSHPEV QRLGERLQRAGIAGFQPREHSPQG NT seq 1695 nt NT seq  +upstreamnt  +downstreamnt atgaaactcatgctgatgtcgctgctactgctgccgctgaccgtgctggccgagccctgc ccgaactgggcggatgcacgtgcagccatggaactgggggccctctcacggcagatcgcc gaatgggacgacgcctatcacaaccagggccattcgctggtcgccgatgaaatctacgat caggcacgcgggcgcctgcaggcctggcaccagtgcttcccaacagcactcgacaacctg ccggaaccgctggcgggcagcacgggcaagctcgcccacccggttgcacaaaccgggctg cgcaaactgaacgatgcggcggtagccgaatggatcgccagccgcagcgacctgtggatt cagcccaaggtcgatggtgtcgccgtcacgctggtctatcgccacggcgttctgcagcat gccgtcagccgcggcgacgggcgccatgggcaggactggaccgcccgagcccgacaactg ccgggcgtaccgacacgcctgccggagccgctcgatgccgtactgcagggcgagctttac tggcgtctgaatgagcacgtgcaaagccgtgacggtggtgcaggtgcgcggggcaaggta gccgggctgatggcacgacaaacactggaccagcacgaggccgacgccatcggcctgttc gtctgggactggccggacggccctgagcagatgcccgagcgcctgcaggccctgcacagg ctcggcttcagcgacagcctgcagtacacccaggcgcttcgaagcccggaccaagctagc ctctggcgtcaacgctggttcgatcagccgcagccattcgccagcgacggcgtggtactc cgccagggcacgcgtccctctggcgaacgctggcaagccgaggcgccacactgggcaatt gcctggaaatacccggccagccaggcactggccgtggtacaggcggtgcacttcagcatc ggccgcaccgggcgtatcacgccgatcctgcacctacagccggtcgatctcgatgaacgc cgcatcagccgcgttgccctcggttcgctgcaaagctgggagaagctggatatacgtccc ggcgatcaggtgtcgatacgcctggctggcctgaccattccgcgtctcgaccaggtgatc tggcgcagcccggagcgagcagtggtgcacgctcccgacccagaccagtaccacgccctt agctgctggcggctcagcgccgaatgtcgacaacagttcctcgcacgcctgaactggctc gccggcaagcagggtctgaacctgaacggtctcgggccaggcacctggagcacgctgctg gccagcgagcaactggacggcctgctcgattggctggagttcgacagccagcgactgcaa caactgcccggcatcggtccacggcgcgcctcgcagttgcagcagtccttcgctcaggct cagcagcgctcactgcagcaatggctgcaggcgctcggcgcaccgcccgacctgaagctc ggtgcggaggatgactgggcgaccctgctgactcgcaatcgcgccgagtggatgcagcag cccggcatgagccagaagagcgcagagcgcctgctggccttcttcagccaccccgaagtc cagcgcctgggcgagcgcctgcagcgggcaggcatcgccggcttccagccccgggaacat tcaccacaaggctga

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