Candidatus Phytoplasma mali: ATP_00275
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Entry
ATP_00275 CDS
T00729
Symbol
lig
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pml
Candidatus Phytoplasma mali
Pathway
pml03030
DNA replication
pml03410
Base excision repair
pml03420
Nucleotide excision repair
pml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ATP_00275 (lig)
03410 Base excision repair
ATP_00275 (lig)
03420 Nucleotide excision repair
ATP_00275 (lig)
03430 Mismatch repair
ATP_00275 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pml03032
]
ATP_00275 (lig)
03400 DNA repair and recombination proteins [BR:
pml03400
]
ATP_00275 (lig)
Enzymes [BR:
pml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ATP_00275 (lig)
DNA replication proteins [BR:
pml03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ATP_00275 (lig)
DNA repair and recombination proteins [BR:
pml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ATP_00275 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ATP_00275 (lig)
MMR (mismatch excision repair)
DNA ligase
ATP_00275 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ATP_00275 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
GerPB
Motif
Other DBs
NCBI-ProteinID:
CAP18462
UniProt:
B3QZS5
LinkDB
All DBs
Position
351116..353095
Genome browser
AA seq
659 aa
AA seq
DB search
MEEIKKRIIFLIDKINKTNYEYYTLNESSLNDQQYDALFRELLYLESKYPEYNYKFSPTT
KIGGPISSKFHKFLHEKSMLSLNNVFNIKELKLFYDRISKKISNFTLLTELKIDGLAVSL
KYKKGILDKAITRGDGYQGELITDNVKTIKELPLKLKEPLDLEVRGEVYMSYESFNYLNQ
IRKKENKSLFANPRNAASGTLRQLDSKVAAERNLSIFLYTIVNPPKFIITQKSILEFLTY
LQFPVNNYYEYVLNWDQLIKKISYYEEIKNHLGYNTDGIVIKINELSFHSIIGYTSKAPK
WAIAYKFKVFKTETLINNILFQIGRTGIVTPIAELLPTIVDGSVISKVNLHNFDYIKQKD
IRVNDFVLVHKSGSIIPEIIEVIKTKRKNQIPFEMITHCYSCNTKLIKKDSNHFCFNLDC
EEKKIQELFYFVSKSAMDINVLGLQTLKILFYKGFINNISDLYSLNQYKKEVEELHGFGK
KKFNNIIISLEKSKNKCLSNFLIGLGIKNVGIHLAKILAQKFENIDNLQKASIESLLKID
EIGIKSAQNIKNFFLNSKNLKLIEKFKNLGLNLFYFKSKNNIKNNIFKNKKVIFTGILEK
YSRNQAQNIVIELGGVIINSITNKTNYLILGKNPGSKLLKAKKFNIKVLQEHEFEELIK
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaataaaaaaaagaattatatttttgattgacaaaattaataaaacaaattat
gagtattatactttgaatgaatctagtttaaacgatcaacaatatgatgctttatttcga
gaattactatatttagaatctaaatatccagaatataattataaatttagcccaacaact
aaaattggtggtcctatttcatcaaaatttcataaatttttacatgaaaaatcaatgtta
tcattaaacaatgtttttaatattaaagaattaaaattgttttatgatagaatttctaaa
aaaatttctaattttactttattaactgaattaaaaatagatggattagctgttagttta
aaatataaaaaaggaattttagacaaagctattactagaggtgatggttatcaaggagaa
ttaattactgataatgttaaaactattaaagaattacctttaaaactaaaagaaccttta
gatttagaagtccgcggtgaagtttatatgtcttatgaatcatttaattatttgaatcaa
attagaaaaaaggaaaataaaagtttatttgccaatccaagaaatgcagcttccggaaca
ttaagacaattagattctaaagtggctgctgaaagaaatttatctatttttctctatact
attgtaaatcctccaaaatttattattactcaaaaatcaattttagaatttttaacttat
ttgcaatttcctgttaataattattacgaatatgttttgaattgggatcaattaattaaa
aaaattagttattatgaagaaattaaaaatcatttaggttataatactgatggcattgtt
attaaaattaatgaattatcatttcattctataattggttatacttctaaagctcctaaa
tgggctattgcttataaatttaaagtttttaaaactgaaactttaattaataatatttta
tttcagattggaagaacaggcattgttactccaatcgcagagcttttaccaactatagtt
gatggtagcgtaatttccaaagttaatttacacaattttgattatattaaacaaaaagat
attagagttaatgattttgttttggttcataaatctggtagtattattccagaaattata
gaagttattaaaactaaaagaaaaaatcaaattccttttgaaatgattacacattgttat
tcttgtaatactaaattaattaaaaaagactctaatcatttttgtttcaatttagattgt
gaagaaaaaaaaatacaagaattattttattttgtttctaaatcagctatggatattaat
gttttaggattacaaactttaaagatattattttataaaggttttataaataatatttca
gatctttattctttaaatcaatataaaaaagaagttgaagaattacatggttttggtaaa
aaaaaatttaataatattattatttctttagaaaaaagtaaaaataaatgtttatctaat
tttttaataggtttaggaattaagaatgttggtattcatttagctaaaattttagctcaa
aaattcgaaaatattgataatttacaaaaagcttccatagaaagtttattaaaaattgat
gaaataggaataaaaagtgctcaaaatattaaaaatttttttttaaattcaaaaaattta
aaattaatagaaaaatttaaaaatttagggcttaatttattttattttaaaagtaaaaat
aatattaaaaataatatttttaaaaataaaaaagttatttttacaggtattttagaaaaa
tattctagaaatcaagcacaaaatattgttattgagttaggaggtgttattattaatagt
attactaataaaacaaattatttaatcttaggtaaaaatcctggttctaaattattaaaa
gctaaaaaatttaatattaaagttttgcaagaacatgaatttgaagaattaattaaataa
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