Passer montanus (Eurasian tree sparrow): 120509578
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Entry
120509578 CDS
T07277
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Pathway
pmoa03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120509578 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmoa03000
]
120509578 (KDM2B)
04121 Ubiquitin system [BR:
pmoa04121
]
120509578 (KDM2B)
03036 Chromosome and associated proteins [BR:
pmoa03036
]
120509578 (KDM2B)
Enzymes [BR:
pmoa01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
120509578 (KDM2B)
Transcription factors [BR:
pmoa03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
120509578 (KDM2B)
Ubiquitin system [BR:
pmoa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120509578 (KDM2B)
Chromosome and associated proteins [BR:
pmoa03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
120509578 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
120509578 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_4
Motif
Other DBs
NCBI-GeneID:
120509578
NCBI-ProteinID:
XP_039580320
LinkDB
All DBs
Position
Unknown
AA seq
1256 aa
AA seq
DB search
MKLSKKMEAKKDSGRRLRCIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVH
AMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSTDSYSSDSWLDMDEESCDAHLQEEKDDSLDKNSKSLVDGSSSPNSTH
SEGKEAAGRKQKATVMRYLKRTLSNESDDSIKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTTKNRAVGRPKGKLGAASAVKLAANRSTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLL
KEQKINRDNKEVPDAAKRKGDCEETPRRKSEEHSKKAPVDSILRRKSDEVHLWRKRKFEK
SQEPTMRKRRRSWKAPDDRTAMIKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAGPS
TEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESEN
EEPKRALNNSERLHRFSKGLNGTPRELRHHQLMPSLRSTPRGIARPPPSLSPPKCIQMER
HVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKR
LWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCS
WIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNIVELRL
AGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNK
VTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctcaaaaaaaatggaggcaaagaaagactctggaagaagattgcggtgcatc
ggccgaaggcggtacgatgagaacgaggacctctcggacgtggaggaaattgtcagcatc
aggagtttcaatttggaagagaaattaaagagtaaaatgtaccacggggatttcgtgcat
gccatggacggcaaagattttacttttgagtatgtgcaaagagaagctctcagagttccc
ctcatcttcagaaataaggatggactgggaattaaaatgcctgacccggatttcaccgtt
agagatgtgaagctattagtgggaagccgccggatcgtggatgtgatggatgtgaacaca
cagaggggagttgagatgagcatgtctcagtttgtcaggtactacgagaccccagaggcc
cagagggagaagctctacaacgtcatcagcctggagttcagtcacaccaagctggagaac
attgtcaagcgccccaacgtggtggatttagtcgactgggtggataatatgtggccacag
cacttgaaggagagacagacggatgctaccaatgctatttcagagatgaaataccccaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgattttcatattgatttt
ggtggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctgattcca
cctactctgcagaatctagaactttatgaagaatgggttctctcaggaaagcaaagtgat
atcttcctgggagacagggtggaacggtgccaaagaattgagctgaaacagggctacacg
ttcttcattccttcagggtggatacacgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcacgccaaattccgctatcctttctactatgagatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaaaagaaaacgcagcacagacagctactcatcagat
tcgtggttagacatggatgaagaatcttgtgatgcccatctccaggaggagaaggatgac
agcttggataagaactccaaatccttggtggatggctcctcctcacccaacagcacacac
tcagaagggaaggaggctgcagggaggaaacaaaaagccacagtgatgaggtacctgaaa
agaactttgtctaatgagtcagatgacagcataaaatcaacgaccccgacggactatccc
aaaacacccacggggtctccagctacagaagtttcaaccaaatggactcacctcacagaa
tttgaactgaagggtttaaaagccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaagaccctcaggctctcctggaggacatgaagaacata
ctaaaggaacatgctgatgatgaccaaaatcttgccatttcgggtgtccctgtggtcagc
tggcccaagaagaccacaaagaacagggcagtcgggcggcccaaggggaagctgggcgct
gcctcggcggtgaagctcgcggccaaccggagcacggcgggcgcgcggcggcgcaggacg
cgatgccgcaagtgcgaggcgtgcctgcggacggagtgcggcgagtgccacttctgcaag
gacatgaagaagttcggggggcccggcaggatgaagcagtcctgcatcatgaggcagtgc
atagctccggtgctgcctcatactgctgtgtgtctggtgtgtggagaagctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaatcatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgat
gagctgccgaactgctgggagtgtccaaagtgcaaccacgcagggaaaactggaaaagcg
tacaagcaaaagcgcggaccaggatttaaatacgcgtcaaatctcccgggctcgctgctg
aaggagcagaagattaacagagacaacaaggaagtgcccgacgctgccaaacggaaaggg
gactgcgaggagactcccaggaggaaatcagaggaacattccaaaaaggctccggttgac
tccatcctgaggagaaagtctgacgaggtgcatctgtggaggaagcggaaattcgagaag
tcccaggagcccacgatgagaaagaggcggcgatcgtggaaggcccccgatgaccgaact
gccatgatcaagcccctgcggcgcctcaagcaggagcccgaggacgagctgccagaagca
ccccccaggtccaaggacagcgaccagtctcggtccagctcgcccacagcagggcccagc
acggagggcgccgagcccagggacaagaagaagttcaagatgaggaggaaaaggcggctt
cccaataaggaactgagcaaggagctcagcaaagagcttaaccaggagatccaaaaaacc
gagaacagccttgccaatgagaaccaccaacccatcaaatctgaaccggagagcgagaac
gaggaacccaagcgcgcgttgaacaacagcgagagactccacaggttcagcaaagggttg
aacgggactccccgggagctgaggcaccaccagctcatgcccagcctgcgcagcaccccc
cggggcatcgcccggcccccgccctcgctgtcgccccccaagtgcatccagatggagcgg
cacgtcatccggcctcctcccatcagcccccctccggactcgctgcccctggatgacggg
gcagcccacgtgatgcagagggaagtctggatggctgtctttagctacctcagtcataga
gacttgtgcatctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaaaga
ttatggaccaaaatagatttaaaccattgtaaatccatcactccacttatgcttagtggc
attattaggagacagcctgtaacccttgatcttagctggacaaatatatctaaaaagcag
ctgagttggcttatcaacagactgccaggtctgcgggacctgctgttgtcagggtgctct
tggatagcagtgtcagcactttgtagctccagttgtcccttgctgcgaactctggacgtg
cagtgggcggaaggactgaaagacgcacaaatgagagacctcctgtccccgcccacggac
aaccggccaggtcagatcgacaaccgcagcaagctacggaacatcgtggagctgcgcctg
gcggggctggacatcacggacgcttcgctgcgcctcatcatccggcacatgcccctgctc
tccaaactcaacctcagctactgtaaccacgtcacagatcagtctattaacctgctgacc
gccgtcggaaccaccacgcgggattccttaacggaaattaatttatcagactgcaataag
gtcactgaccagtgcctgtcttacttcaaacgttgtgggaacatctgccagatcgacctg
aggtactgcaagcaggtgacgaaggagggctgtgagcagttcatagcagagatgtccgtg
agcgtccagttcgggcaggtggaagaaaaacttctgcaaaaactgagttag
DBGET
integrated database retrieval system
