Pseudomonas monteilii SB3078: X969_17630
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Entry
X969_17630 CDS
T02972
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmon
Pseudomonas monteilii SB3078
Pathway
pmon03030
DNA replication
pmon03410
Base excision repair
pmon03420
Nucleotide excision repair
pmon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
X969_17630
03410 Base excision repair
X969_17630
03420 Nucleotide excision repair
X969_17630
03430 Mismatch repair
X969_17630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmon03032
]
X969_17630
03400 DNA repair and recombination proteins [BR:
pmon03400
]
X969_17630
Enzymes [BR:
pmon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
X969_17630
DNA replication proteins [BR:
pmon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
X969_17630
DNA repair and recombination proteins [BR:
pmon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
X969_17630
NER (nucleotide excision repair)
GGR (global genome repair) factors
X969_17630
MMR (mismatch excision repair)
DNA ligase
X969_17630
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
X969_17630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
5_3_exonuc
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AHC83687
LinkDB
All DBs
Position
complement(3716052..3718382)
Genome browser
AA seq
776 aa
AA seq
DB search
MTAETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEYPHLVTPDSPTQR
VGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQPGAVDYSCEPKLDGLAV
SLLYRDGLLVQGATRGDGTTGEDISANVRTVRNIPLRLQGEGWPTVLEVRGEVYMSKAGF
DRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSASIGDSHIGI
LEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF
RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMD
EIARLGLRVGDTVIIRRAGDVIPQVMQVVLERRPEDARPVQVPSECPVCGSQVERTQLVK
RSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGS
PADLYKLEFDQIVGLEGFAEVSSKKLLDAIEASKRPGLARFIYALGIPDVGEETAKVLAR
SLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNRKVIKQLLDSGMQLQDEGELA
AEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIAADGIDLRQALAAKQAEAVR
EFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLERMSRDIAKEK
LESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEDAFVTFLGEQGIAV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgaaacccgtatccacgaactgcgtgccgagctcgaccagcacaactatcgc
tactacgtgctcgatgagccaagcgtgcccgatgccgaatacgaccgcctgttcaacgag
ctcaaggcgcttgaagccgaatacccgcacctggtaacccccgactcgcccacccagcgc
gtcgggggcgcagccctggccgcgttcagccaggtccgccacgaagtgcccatgctcagc
ctgggcaacgctttcgaagaagccgacctgcgtgagttcggccgccgcgtggtagacggc
ctcgaccagcccggtgcggtcgactacagctgcgagcccaagctcgacggcctggccgtg
agcttgctgtaccgcgacggtctgctcgtacagggcgccacccgtggcgacggcaccacc
ggcgaagacatcagtgccaacgtacgcaccgtgcgcaacatcccgctcaggctgcaaggc
gagggatggcctacggtgctggaggtgcgcggcgaggtttacatgagcaaggccggtttc
gaccggctcaacgccgcccaggccgaagccggtggcaagaccttcgccaacccgcgcaac
gccgcagccggcagcctgcgtcagctggactcgaaaatcaccgccagccgcccgctggaa
ttctgctgctatggcgtcggccaggtgtccgcgagcatcggcgacagccacatcggcatc
ctcgaacagctcaaggcgtgggggttgccgatcagccgcgaactcaagcatgccgccggt
atcgaagaatgcctggcctactatcgcgacatcggcgagcgacgcaacagcttgccctac
gaaatcgacggcgtggtgttcaaggtcaacagcctggccgcccagcgcgaactgggcttc
cgtgcccgtgagccccgctgggcgattgcccacaagttcccggccatggaagagctgacc
gaggtgctggatgtcgagttccaggtcggccgcaccggcgccgtaacgcccgtggcacgc
ctgaagccggtcaaggtggccggtgtgaccgtgtccaacgctaccctgcacaacatggac
gaaatcgcccgcctgggcctgcgcgttggcgacacggttatcatccgccgcgccggtgac
gtgattccgcaggtgatgcaggtggtgctggagcgccgcccagaggatgcgcgcccggtg
caggtgccgagtgagtgcccggtatgcggctcgcaggtcgagcgtacccagttggtcaag
cgtagcaagggcaaggaaacaaccagcgagggggcggtgtaccgctgcgtcggtcgcctg
gcctgtggcgcccaactcaagcaggcgatcatccactacgtgtcacgccgcgccatggac
atcgatggcctgggcgagaagagcgtcgagcaactggtggacgaaggcctgatcggttcg
ccggccgacctgtacaagctggaattcgaccagatcgtcggcctggaaggctttgccgaa
gtgtccagcaagaagctgctggatgccatcgaagccagcaagcgcccgggcctggcgcgc
ttcatctacgccctgggtatcccggacgtaggcgaggagaccgccaaggtgctggcccgc
tcgctgggcagcctggcgcgggtgcagcaggcgctgccgcaggtgctcacctacctgccg
gacatcggcctggaggtggcgtacgagatccacaacttcttcgaggacgagcacaaccgc
aaggtcatcaagcagttgctcgacagcggcatgcaactgcaggacgaaggcgagctggct
gccgagttcgccgccagcaccaccctggccggcatgatcgccaagctcgacatcgcctcg
gttggcccgaccggtgccgagaagctggtggccaagctagacagcctggacaagatcatc
gccgccgatggtatcgacctgcgccaggccctggcggccaagcaggccgaagccgtgcgc
gagttcttcaaggatgaagccaaccagaagctggcccgggacatcgaggcacagttgctg
gcgttcggcatgcactggagcagcgagaagaaagtggccgaaggcttgccgctggccggc
cagacctgggtgctgaccggcaccctggagcgcatgagccgcgacatcgccaaggaaaag
ctggaaagcctgggggccaaggtggcgggttcggtatccggcaagacccactgcgtggtg
gcggggccgggggcggggtccaagctggccaaggccagtgagttgggtgtgaaggtgctt
gatgaagatgccttcgtcaccttcctgggcgaacagggcatcgctgtctga
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