Proteus mirabilis HI4320: PMI1823
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Entry
PMI1823 CDS
T00753
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmr
Proteus mirabilis HI4320
Pathway
pmr03030
DNA replication
pmr03410
Base excision repair
pmr03420
Nucleotide excision repair
pmr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PMI1823 (ligA)
03410 Base excision repair
PMI1823 (ligA)
03420 Nucleotide excision repair
PMI1823 (ligA)
03430 Mismatch repair
PMI1823 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmr03032
]
PMI1823 (ligA)
03400 DNA repair and recombination proteins [BR:
pmr03400
]
PMI1823 (ligA)
Enzymes [BR:
pmr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PMI1823 (ligA)
DNA replication proteins [BR:
pmr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PMI1823 (ligA)
DNA repair and recombination proteins [BR:
pmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PMI1823 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PMI1823 (ligA)
MMR (mismatch excision repair)
DNA ligase
PMI1823 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PMI1823 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAR43788
UniProt:
B4EZR2
LinkDB
All DBs
Position
complement(1960076..1962103)
Genome browser
AA seq
675 aa
AA seq
DB search
MNQNIQQQIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELITPDSPT
QRVGALPLTAFEQVRHEIPMLSLDNAFDETTYLAFDKRLRERLKNNEEITFCCELKLDGL
AVSLLYENGRLVQAATRGDGTTGENITENVRTIKAIPLRLYGDNIPARIEIRGEVFMTEK
GFEHLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPTSH
YARLQQFKKWGLPVSDAIKLCTGTKAVLDFYHHVAEIRPNLGFDIDGVVIKVDDIALQEE
LGFVSRAPRWAIAYKFQAQEQMTVIKDVEFQVGRTGAITPVARLDPVQVAGVIVSNATLH
NADEIERLGLRIGDTVVIRRAGDVIPQVVSVIEEKRPENAQEIVFPTQCPICQSDIERIE
GEAVARCTGGLICAAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKTPADLFRLDE
KILSGLERMGEKSAKKLLNALEKAKSTTFARFIYALGIREVGEATANGLTAHFVSLEALR
EANIEALKAVPDVGDIVAKHVVNFFQEEHNKNVIDQLVNDIGITWPAPVVATHEAGDNPF
AGKTVVLTGSLSQLTRDEAKDRLVALGAKVSGSVSKKTDMVIAGEAAGSKLAKANELGIT
VIDEDEMIRLLDQSK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaaatattcaacaacaaattgatgaacttcgcgttacactacgtcaccatgaa
tatctctatcatgtcatggacgcacctgaaattcctgatgctgaatacgatcgcttaatg
aataagctaaaagcattagaagccgaacatcctgaactcattaccccagattctcctact
caacgggtaggggcattacctttaacggcttttgagcaagttagacatgaaattccaatg
ctctctttagataatgcttttgatgaaacaacctatttagcatttgataaacgtttacgt
gaacgtctgaaaaataatgaagagatcactttttgttgtgaattaaaattagatggactt
gcggtaagtctactgtatgaaaatggtcgcttagtacaagctgcaacccgtggtgatggt
accactggagaaaatattactgagaatgtcagaaccattaaagccattcctttgcgttta
tatggcgataatatccccgcacgaattgaaattcgtggagaagtctttatgactgaaaaa
gggtttgagcatttaaatgaagaagctcgacgcacgggaggaaaagtatttgctaatcct
cgtaatgcagcagcgggttcattacgtcagttagatcctcgtattacagccaagcgccct
ttgactttcttctgttatggtgttggcgtgcttgaaggcggtgaattaccgacaagtcat
tatgcacgcttacagcaatttaaaaaatggggattacctgttagtgatgctattaaatta
tgtaccggaactaaagctgtacttgatttttaccatcatgtagcagaaattcgccctaat
ctaggctttgatattgatggtgtggttatcaaagtagatgatatagctctacaagaagag
ttgggatttgtgtctcgtgctccccgttgggcgattgcttacaaattccaagcccaagag
cagatgacggtgattaaagatgttgaatttcaagtggggcgtacaggggcgattacacct
gtcgctcgtttagatcccgtacaagtggcaggggtaatagtcagtaatgccacacttcat
aatgctgatgaaattgaacgtttaggattacgtattggtgatacggtggttattcgccgt
gcaggcgatgttattcctcaggttgtgagtgtgattgaagaaaaacgccctgagaatgca
caagaaattgtttttccaacccaatgccctatttgtcaatctgatattgagcgtatagaa
ggtgaggctgttgcccgctgcacggggggattaatttgtgcagcgcaacgtaaagaggcg
cttaaacatttcgtttctcgtcgtgcgatggatgttgacggcatgggagataaaattatc
gaccaattggttgaaaaagagtatgtcaaaacaccggctgatttattccgtttagatgaa
aagatcttatctggtttagaacgtatgggggagaaatcagccaaaaaactgcttaatgca
ttagaaaaagcaaaatcaaccacttttgcccgttttatctatgcccttggtattcgtgaa
gtaggagaagcaacggccaatggattaaccgctcattttgtttcattagaggcattacgt
gaagcaaatattgaagccttaaaggcagttcctgatgtgggtgatattgttgcaaagcat
gtggttaattttttccaagaagaacataataaaaatgtgattgatcaacttgttaatgac
attggcattacttggccggcaccggttgtggctactcatgaagcaggtgataatcctttt
gctggtaaaacagtcgtgctgacaggctctctttctcaattaacgcgagatgaagcaaaa
gatagattagttgcacttggtgcaaaagtgagtggtagtgtttcgaaaaagacagatatg
gtcattgctggtgaagcggcgggttctaaattagccaaagcaaatgaattaggtattact
gttattgatgaagacgaaatgatccgcttgcttgatcaatctaaataa
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