Petromyzon marinus (sea lamprey): 116943196 Help Entry 116943196         CDS       T09614                                  Symbol THBS1 Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism pmrn  Petromyzon marinus (sea lamprey) Pathway pmrn04115   p53 signaling pathway pmrn04145   Phagosome pmrn04148   Efferocytosis pmrn04350   TGF-beta signaling pathway pmrn04510   Focal adhesion pmrn04512   ECM-receptor interaction pmrn04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:pmrn00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     116943196 (THBS1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     116943196 (THBS1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     116943196 (THBS1)    04148 Efferocytosis     116943196 (THBS1)   09143 Cell growth and death    04115 p53 signaling pathway     116943196 (THBS1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     116943196 (THBS1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     116943196 (THBS1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:pmrn04131]     116943196 (THBS1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:pmrn00536]     116943196 (THBS1) Membrane trafficking [BR:pmrn04131]  Endocytosis   Phagocytosis    Opsonins     116943196 (THBS1) Glycosaminoglycan binding proteins [BR:pmrn00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    116943196 (THBS1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CCN EGF_3 TSP1_CFP_C TSP1_ADAMTS EGF cEGF Laminin_G_3 TSC22 DivIVA YtiC Motif Other DBs NCBI-GeneID:  116943196 NCBI-ProteinID:  XP_032811731 UniProt:  A0AAJ7WVV8 LinkDB All DBs Position 17:complement(3384637..3412756) Genome browser AA seq 1154 aa AA seqDB search MGSAWRALVLLAFVGAAHPYDYGTDDNGVFDVFDMSRITRRTAGVKLVKGPDANSPAFKI IRAERVPSAEERSLKSLLEAMRQEKSFVFQASLRQEKRSRGTLLAVDSADGSARLFEIVS NGHADTLDLVHAQSVRSFEHVDLATFAWKNITLYVDHESAKLYVGCELINVLSLDGPVYQ QLYPDTSRLRLGKGFVSDKDDFRGSLQNVRFIFGTSLEDILRNKGCVRNDGGGFLGTPAI KTDYTGHKVNKVMEFCGISCNEVKRIYNEVKALRSTVTYLVDGLQKLKEENENLKNTMDI QEKGKCLYEGRLYDNHTEWTINSCTTCTCRDSKTHCRQITCPPVTCATPHVPEGECCPTC LLGDSEAGWSPWSEWTECSVTCGSGTQQRGRSCDSVNNPCEGPSIQGRTCQLKACDKRVR QDGGWSFWSPWSSCSVTCGAGVNTRIRLCNSPVPQMGGDECDGSGRENQKCEMEPCPVDG QYGPWSPWSACPVTCGGALRERARLCNNPKPQYNGKDCLGSDRETEICNKKPCPVDGCLS NPCFAGAKCNSFADGTWKCGACPKGYQGNGIECSDINECEVVSGMCFRDDRCVNEAPGFR CMPCPPRFSGNLPYGIGLEDAKLSKQVCEPQNPCKDGTHKCHKNSKCVYLGHQRDPMYKC ECNPGYAGNGVICGEDTDLDGWPNKDLVCLDNTTYHCVKDNCPNLPNSGQEDYDKDGVGD ACDDDDDNDGITDDGDNCPMVFNPRQYDYDRDNVGDRCDNCPYDHNTDQADTDGNGTGDA CSPDIDGDDVLNEIDNCPYVYNADQRDTDLDGVGDQCDNCPLQHNPDQADADSDLVGDTC DSNEDIDEDGHQNNLDNCPYIPNSNQADHDGDGKGDACDHDDDNDGIPDDKDNCRLVANP DQLDSDGNGRGDACKYDFDNDTVLDIDDVCPENSGITFTDFRKFQMVPLDPKGTAQIDPN WVVRHQGKELVQTVNCDPGLAIGYDEFNSVDFSGTFFINTERDDDYAGFVFGYQSSARFY VVMWKQITQTYWQNTPTRAQGYAGLQIKVVNSTTGPGEHLRNALWHTGNTPGQVRLLWHD PKVIGWKDFTAYRWQLTHRPKTGFIRVVMYEGKKIMADSGPIYDKTYAGGRLGMFVFSQE MVYFSDLKYECRDL NT seq 3465 nt NT seq  +upstreamnt  +downstreamnt atggggtctgcgtggagggcgctcgtcctgctggcgtttgttggcgcggctcatccctac gattatggcacggatgacaacggcgtgttcgacgtgttcgacatgagccgaatcacccgt cgcacggccggcgtcaagctggtgaaggggcccgacgccaacagccccgcgttcaagatc atccgggccgagcgtgtcccgtcggccgaggagcgcagtctcaagagcctgctggaggcg atgcggcaggagaagagcttcgtcttccaggcgtcactgcgccaggagaagcgtagcagg ggcactctcctcgccgtggactcggccgacggatccgcccgcctcttcgagatcgtgtcg aacggacacgcggacacgctcgatctggtgcacgcgcagagcgtgcgctccttcgagcac gtggacctggccacgttcgcgtggaaaaacatcacgctgtacgtggaccacgagagcgcc aagctgtacgtgggctgcgagctcatcaacgtgctgagcctggacgggcccgtgtaccag cagctgtaccccgacaccagccgcctgcgtctgggcaagggcttcgtgagcgacaaggac gacttcaggggctcactgcaaaacgtccgcttcatctttggcacgtccctggaggatatt ctgaggaacaaggggtgcgtcaggaatgacggtggcggttttcttgggacgcctgccatc aagacggactacacggggcacaaggtgaacaaggtgatggaattctgtggcatctcctgc aacgaggtcaagaggatttacaatgaggtcaaggctctacggagcacggtcacgtacttg gtggacggcctccaaaagctgaaagaggagaacgagaacctgaagaacaccatggacatc caggagaagggcaagtgcctgtacgaggggcgactctacgacaaccacaccgagtggacc atcaacagctgcaccacctgcacctgccgggattccaagacgcactgccggcagatcacg tgccctcccgtcacttgcgcgactcctcacgtccccgagggagagtgctgcccgacgtgc ctgctgggcgacagcgaggctggctggtcgccctggtccgagtggaccgagtgctccgtg acgtgcggctcgggcacgcagcagcgaggccgctcctgcgacagcgtcaacaacccctgc gagggaccctccatccagggccgcacctgccagctcaaggcctgcgacaaacgagtccgt caggacggcggctggagcttctggtcgccctggtcgtcgtgctcggtgacgtgcggcgcg ggagtgaacacgcgcatccgcctctgcaactcgcccgtgccgcagatgggcggcgacgag tgcgacggctcgggccgcgagaaccagaagtgcgagatggagccctgccccgtggatggg cagtacgggccttggtctccatggtcggcctgccccgtgacgtgcggcggggccctccgt gagcgggcgcgcctctgtaacaatcccaagccgcagtacaacggcaaggactgcctgggg tcagaccgcgagaccgagatctgcaacaagaaaccttgccccgttgacgggtgcttatcc aacccttgctttgctggagcaaagtgcaacagttttgcagatggcacgtggaagtgtggg gcttgtcccaaaggctatcaaggaaatgggatcgagtgctctgacatcaacgagtgcgag gtggtgtccggaatgtgcttccgcgatgaccgctgcgttaacgaggccccgggttttcgc tgcatgccgtgccccccgcggttctcgggcaacctgccgtacgggatcgggctcgaagat gccaagctttctaagcaggtgtgcgagccgcagaacccgtgcaaggacggcacccacaag tgccacaagaactccaagtgcgtctacctgggccaccagcgcgaccccatgtacaagtgc gagtgcaaccctggctacgcgggcaacggcgtcatctgcggcgaggacaccgacttggac ggctggcccaacaaggacctcgtctgtttggacaacaccacctaccactgcgtcaaggac aactgtcccaacctacccaactctggccaagaggactacgacaaggatggcgttggagat gcttgtgatgatgacgatgataacgatgggattaccgacgatggggacaactgccccatg gtgttcaacccacggcaatacgactacgacagggacaacgttggcgaccgctgtgacaac tgcccctacgaccacaacacggaccaggccgacacggacggcaacggcaccggcgacgcc tgctcaccggacatcgatggcgacgacgttctgaatgaaatcgacaactgcccctacgtg tacaatgccgaccagcgcgacactgaccttgatggagtgggtgaccagtgcgacaactgc cctctacaacacaacccagaccaggccgacgccgactcggacctggtgggcgacacgtgc gacagcaacgaggacatcgacgaggacggccaccagaacaacctggacaactgcccgtac atccccaactcgaaccaggccgaccacgacggcgacggcaaaggggacgcctgcgaccac gacgacgacaatgatggcattcccgacgacaaggacaactgccgcctcgtggccaacccc gaccagctcgactctgatggcaatggccgtggcgatgcgtgcaagtacgactttgacaac gacaccgttctggacattgacgacgtgtgccccgagaactctggcatcaccttcacggac ttccgcaagttccagatggtgccgctcgacccgaagggaacggcccagatcgaccccaac tgggtggtgaggcaccagggcaaggagctggtgcaaaccgtcaactgcgatccaggtctc gctatcggctacgacgagttcaattcggtggacttcagcggcaccttcttcatcaacacg gagcgggacgacgactacgccggcttcgtcttcggctaccagtccagcgcgcgcttctac gtggtcatgtggaagcagatcacgcagacatactggcagaacacgcccacgcgcgcccag ggctatgccgggctgcaaatcaaggtggtcaactccacgaccggtcccggcgagcatctg cgcaacgccctgtggcacactggaaacacccctgggcaggttcgtctgctgtggcatgac cccaaggtgatcgggtggaaggatttcactgcttacagatggcaactcacacaccggcca aagactggcttcattcgagttgtgatgtacgaaggaaagaagatcatggctgattcggga cccatctacgacaaaacatatgctggcggtcgtcttggaatgttcgtcttttcccaagag atggtgtacttttcagatctcaagtatgaatgtcgagatttataa

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