Petromyzon marinus (sea lamprey): 116943590
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Entry
116943590 CDS
T09614
Name
(RefSeq) short transient receptor potential channel 4-like isoform X1
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pmrn01009
]
116943590
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pmrn04040
]
116943590
Protein phosphatases and associated proteins [BR:
pmrn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116943590
Ion channels [BR:
pmrn04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
116943590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank
Ank_3
Ank_4
Ank_5
PKD_channel
YVC1_C
Motif
Other DBs
NCBI-GeneID:
116943590
NCBI-ProteinID:
XP_032812445
UniProt:
A0AAJ7T974
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Position
18:4461822..4491275
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AA seq
1021 aa
AA seq
DB search
MAQLYYKRSEQAPYRDRIPLRIVRAEAELSPAEKLYLSAVDKGDYAGVKRSLEEAQIYFN
ININCTDPLGRSALLIAIENENLEVIELLLSSNVFVGDALLHAIRKEVVGAVELLLNHKK
PRGDKQVPPVLLDRQFSEFTPDITPIVLAAHANNYEIIKLLVRRGVSIPRPHPVRCSCGE
CVSSSEVDSLRHSRSRLNIYRALASPSLVALSSEDPILTAFQLSWELKELSKVENEFKSE
YEELSQQCKRFAKDLLDQTRSSKELEIILNHNDDPKAVVDPNNPYNLDRLQLAIKYHQKE
FVAQPNCQQLLATLWYDGFPGWRRRHWAIKLFTCLAIGLLFPVLSLCYLIVPKSRFGVFI
KKPFIKFICHTASYLTFLLLLLLASQHIVQTDLSMQGPPPTKVEWIVLPWIVGFIWAEIK
QMWDRGLMQYVNDWWNLMDFVMNSLYLATISLKVVAYVKYNGSRPRDDWEMWHPTLVAEA
LFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYF
YYETSADDENHCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVRPRHEFTEFVG
ATMFGTYNVISLVVLLNMLIAMMNNSYQLIAVRSGESSIISDHADIEWKFARTKLWMSYF
EEGGTLPTPFNIIPSPKSVWYLCQWLGRRLCPCSLLSTRRKRHESLGTLGVRAQMTLRRA
ADNLRRNHQYQEVIKNLVKRYVAAMIREARTEEGLTEENFKELKQDISSFRYEVLGLLKK
GSRKRVADRGDVANSADSRGDRSAEEEEEARGAASSLAVVDAAAAATAARAPLCLSANGV
LVYDTDSAGAASARLDDRRSLSRKRVFAWRSKVKSRGCGGVAATAGAARGPHAAPSAEAA
AAPSQLNGAIRTVSEEVDRLPGRGGRDDGPGGASRALPRAPAASLGAATSRPWSSRGGRI
PAGGTARGDGRERTKGACAPSPLFASDAEPADAPDESYDTCEEDGAPKRPVHRDSFATTR
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggcccaactctactacaagcgcagcgagcaggcgccctaccgcgaccgcatcccgctg
cgcatcgttcgcgccgaggcggagctgtcgcccgccgagaagctctacctgagcgccgtc
gacaagggcgactacgccggcgtcaagcgctccctcgaggaggcccagatctacttcaac
atcaacatcaactgcaccgacccgctgggccgcagcgcgctgctcatcgccatcgagaac
gagaacctggaggtgatcgagctgctgctgagcagcaacgtgttcgtgggcgacgcgctg
ctgcacgccatccgcaaggaggtggtcggcgccgtcgagctgctgctcaaccacaagaag
ccccgcggtgacaagcaggtgccgcccgttctgctcgaccgccagttctcggagttcacg
cccgacatcacgcctatcgtgctcgcggcgcacgccaacaactacgagatcatcaagctg
ctggtgcggcgcggcgtctccatcccgcggcctcaccccgtgcggtgctcgtgcggcgag
tgcgtgtcgagctccgaggtggacagcctgcgccactcgcgctcccgcctaaacatctac
cgcgcgctcgccagcccgtcgctggtggcgctctccagcgaggaccccatcctcaccgcc
tttcagctcagctgggagctcaaggagctgagcaaggtggagaacgagttcaagtccgag
tacgaggagctgtcgcagcagtgtaagcgcttcgccaaggacctgctcgaccagacgcgc
agctccaaggagctcgagatcatcctcaaccacaacgacgaccccaaggcggtcgtggac
cccaacaatccgtacaacctcgaccgcctgcagctcgccatcaagtaccaccagaaggag
ttcgtcgctcagcccaactgccagcagctgctggccacgctgtggtacgacggctttccc
ggctggaggcggcggcactgggccatcaagctcttcacctgcctcgccatcggcctgctc
ttccccgtgctctccctctgctacctgatcgtgcccaaaagcaggttcggcgtcttcatc
aagaagccgttcatcaagttcatctgccacacggcatcgtacctcaccttcctgctgctc
ctgctgctggcctctcagcacatcgtgcagacggacctgagcatgcagggtccgccgccg
accaaagtggaatggattgtgctgccgtggatagtaggattcatctgggcagagatcaaa
cagatgtgggaccgtggactgatgcagtacgtcaacgactggtggaacctcatggacttc
gtcatgaactcgctgtatcttgccacaatctcgctcaaggtcgtggcgtacgtcaagtac
aacggctcgcgtccgagggacgactgggagatgtggcacccgacgctcgttgccgaggcc
ctcttcgccatcgccaacatcttcagctcgctgcgtctcatctcgctcttcacggccaac
tcgcacctagggcccctgcagatctcgctgggccgcatgctcctcgacatcctcaagttc
ctcttcatctactgcctcgtgctgctcgccttcgccaacgggctcaaccagctgtacttc
tactacgagaccagcgcggacgatgagaatcactgcaagggcatccgatgtgagaagcag
aataacgccttctccacgctgtttgaaacgctccagtcgctcttttggtccatctttggg
ctcatcaacctgtacgtgaccaacgtgcgtccacggcacgagttcaccgagtttgtgggc
gccaccatgttcggcacgtacaacgtaatctcgctcgtggtgctgctaaacatgctcatc
gccatgatgaacaactcgtaccaactcatcgcggtgaggagcggcgagtccagcattatc
agcgaccatgccgacatcgagtggaagttcgcgcgcaccaagctgtggatgagctacttc
gaggagggcggcaccctcccgacaccgttcaacatcatcccgagccccaagtccgtgtgg
tacctgtgccagtggctcggccgccgcctctgcccgtgcagcctcctgagcacgcgccgg
aagagacacgagagcctcgggacgctcggagtgcgggcccaaatgacgctgagacgtgcg
gccgacaacttgagacgcaaccatcagtaccaggaggtcatcaagaatctggtgaagcgc
tacgttgctgcgatgatacgagaagcgaggacggaggagggtctcacggaagaaaacttt
aaggagctcaagcaggacatctcgagcttccgctacgaggtgctgggactgctcaagaag
gggtcccggaagcgcgtcgccgaccgcggcgacgtcgccaactcggcggactcccgcggc
gatcgctcggcggaggaggaggaggaggcccgcggcgccgcgtcgtcgctcgccgtggtg
gacgccgccgccgccgccaccgccgcccgggcgcccctgtgcctcagcgccaacggagtc
ctggtctacgacacggactcggccggcgccgcgtccgcgcgcctggacgatcgcaggtcg
ctgtctcgcaagcgcgtcttcgcctggaggtcgaaggtgaagagccgcggctgcggaggc
gtcgcggcgacggcgggggcggcgcggggtccgcacgccgcgccctccgccgaggccgcg
gcggcgccgtcgcagctcaacggcgccatccgcaccgtgtccgaggaggtggacaggctg
cccggacggggcgggcgcgacgacgggccgggcggggcatcccgggcgctccctcgcgcc
ccggcggcttcgttgggcgcggcgacgtcgcggccgtggtcgtcgaggggagggcggatc
ccggcgggcggcacggcgcggggcgacgggcgcgaacggacgaagggcgcgtgcgcgccg
tcgcccctgttcgcctcggacgcggagcccgccgacgcgccggacgagtcctacgacacg
tgcgaggaggacggggcgcccaagcggcccgtccaccgggactcgtttgcgaccacgagg
ctgtga
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