KEGG   Petromyzon marinus (sea lamprey): 116943734
Entry
116943734         CDS       T09614                                 
Symbol
APAF1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
  KO
K02084  apoptotic protease-activating factor
Organism
pmrn  Petromyzon marinus (sea lamprey)
Pathway
pmrn04115  p53 signaling pathway
pmrn04210  Apoptosis
pmrn05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pmrn00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    116943734 (APAF1)
   04115 p53 signaling pathway
    116943734 (APAF1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    116943734 (APAF1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd NB-ARC EIF3I WDR55 APAF1_C Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML ANAPC4_WD40 APAF-1-like_WHD Beta-prop_TEP1_C Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st CARD Beta-prop_EIPR1 Ge1_WD40 Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_DCAF4 Beta-prop_WDR75_2nd NACHT Beta-prop_Vps41 AAA_16 WD40_like AAA_22 NPHP3_N Hira CNH Nrap_D6
Other DBs
NCBI-GeneID: 116943734
NCBI-ProteinID: XP_032812741
UniProt: A0AAJ7T7E3
LinkDB
Position
19:7794141..7851178
AA seq 1349 aa
MDERTRSGLLQHRTHLVRDVKPVLLFDHLVSDGVLTDAEEEQLRAQVARQVQASELLKLL
LNKDNYAVISFYNALVKENYIDLAALLQDFLPIPMSPSEEPDHHIKSGSSAFEMMLREGG
VPQRPVVFVERTKQLGAVREALLGLRGAPGWVVLHGMAGCGKSVIAAEAVRDPKLVKECF
PGGVFWVCVGQVDKPTLLIKLQNLCQRLQPERERLDLHNLEQAKDTLRLILTRHHPRCLL
LLDDVWDSRVVKAFDVHSRVLLTSRDSSVTDLATGAKHRVFMDQGLSEEQCLQVLAQWVG
REIKDLPEEAAGIVAECRGSPLVVTLIGALLKDFPSRWSYYLKQLQKKQFKRIRKPSSYD
YDALDEAMEISVSALQVELQDHYNDLVVFQKDTKISSKVLSVLWDMDVVEVEDTMKVLVD
KSLAFQQEDADTFTYSLHDLQHDFLVEKNHAVLQARCFVRLCHIRTAATGGAMKMYKMRC
DVRRMELLRHLSECHAKATVIIQDDAVHLQKRHAKLVDRYFVHSGKNFSSLPDDGYVHFF
LATHMAEAGQKRELCELLFSLEWVEAKLRVVGCAHLINDYLQHEELITNSSQERSMWKDF
LAFLSVNGHHFTPTRLPDVLQLALCQPDSSAVCAQARARLARGHPPNTVYLDWLNKACVA
VSQRLVVRAHAGAVYHAAFSRSGEYVASCAGDGYLKKWNSRTGEELMATYAHDEPVLCCA
FAPNGRVIATGSADHTVKLWNAQSGRLLGPHRAHDGEVQHCTFAHAFHKPLLATCSQDSS
IKLWEWKEQGKGSALLGHSGPVRCCCFSPDDQRLVSCSVDCTLKVWSVKLRQEERSVDVR
ECVDSEDGATKEGERSLALRSCAWSPDGRRIVAVAENIVFVFNALTVACENVLRTHAHCT
ILAVAFAPDSLHCAVGLSSYSLEMWNVKSCRKTADYRGHVGWVHGVAFSADGSWLLSASE
DHTVSLWQVNGEESAAGVYLKRDTHTLFREDGSLRIAAPDINNCLRVVDETGQVVSVSDP
LPSRVRCCCLSGDGRIVAMGCESGIMQIVDTESGNILHVLEGHTKCVRQCQFLMDGHVLL
SCSDDATLRMWRWREGGGQCSVLDEHTEDVKCFCLLSQSLLLSCSFDGTTRLWDLNELSL
VRTFCGQEPHAAILSCQVMPSLGLFVVTCTDKTAQVWQLDGGAMPLHVLQGHTDCVRSCG
FSPDGKILATGDDEGFVMLWSVESGQKWSCQPTARHHAWVTQVSFVREGRILLSAADNIK
FWDVESGRVLQTFYPRGSLLKRVHTSPDGNRLVTVDSIGLLYMLSLLPLAPTASTGPVPP
AKANNHVQKEPPRLDYANFKQAEVPGSEN
NT seq 4050 nt   +upstreamnt  +downstreamnt
atggacgagcggactcgaagcggcctgctgcagcaccgcacgcacctcgtgcgcgacgtt
aagccggtgctgctgttcgaccacctggtgagcgacggcgtgctcaccgacgcggaagag
gagcaactgcgagcgcaggttgcccgccaagtacaggcatcagaactattgaagttgctc
ttgaataaggacaactacgcagtcatctcattctacaatgctctggtgaaggagaactac
attgatctggctgcattgctacaagatttcctgcccatccccatgtctccttccgaagaa
cctgatcatcacataaaaagtggctccagtgcctttgagatgatgctgcgggagggaggc
gtgccacagcgccccgtggtgtttgtggagcgcacgaagcagctgggcgccgtgcgcgag
gcgctgctggggctgcgcggagcgccagggtgggttgtgctgcacgggatggccggctgc
gggaagtcggtcattgcagcggaggcagtgagggacccaaagcttgtgaaagagtgcttc
ccaggaggtgtcttctgggtttgcgtgggccaggtggacaagcccacgctcctcatcaag
ctgcagaacctgtgccagcgtctgcagccagagagagagcggctcgacctgcacaacctc
gagcaggccaaggacacgctgaggcttatactgacgcgacaccaccccaggtgcctgttg
ctgctggatgatgtctgggatagtcgtgtggtgaaggcgtttgatgtccatagccgcgtc
ctgcttacctcgcgagacagcagcgtcactgatctagccactggggccaagcacagagtg
ttcatggaccagggcttgtcggaggaacagtgtctgcaggtgctggcgcagtgggtgggc
agagaaatcaaggacctccccgaggaggctgcaggcatcgtggcggagtgccgaggttct
cctctggtggtgactcttattggggccctgctcaaggactttccttctcgctggagctat
tacctgaaacagctccagaaaaagcaattcaagcgcattcggaaaccgtcctcatacgac
tacgatgctttggacgaggccatggagatcagcgtgtccgccctccaggtggagcttcag
gatcactacaacgacctcgtcgttttccagaaggacaccaaaatatcctccaaggttctg
agtgtgctgtgggatatggatgtggtggaggtggaggacacaatgaaggtcctggtggac
aagtccctggcctttcagcaagaggacgctgacaccttcacgtactccttgcacgacttg
cagcacgacttcctggtggaaaagaaccacgctgtgctgcaggccagatgctttgtcaga
ttgtgccacatacggacagctgccactgggggtgccatgaaaatgtacaagatgagatgt
gatgtaaggcgaatggagttgctgaggcatttaagtgagtgccatgcgaaagcaactgtg
ataattcaagatgatgctgtgcacttgcagaagcgtcacgctaagcttgtcgatcgctac
tttgtacactctggaaaaaacttctcctctctgccggacgacggatacgtgcacttcttt
ctggcgactcacatggcggaggcgggccaaaaaagggagctgtgcgagctgctcttttct
ctcgagtgggtggaggccaaactgcgagtcgtgggctgtgctcacctcatcaacgactac
ctgcagcacgaggagctcatcacgaactcgagtcaggagcggtcgatgtggaaggacttc
cttgcgttcttgtccgtgaatggacaccacttcacgcccacgcggctgccagacgtgctg
cagctggcgctgtgccagcccgacagctcggcggtgtgtgctcaggctcgcgcgcgcctt
gcccgcggtcacccaccaaacaccgtctacctcgactggctgaacaaggcgtgtgtggcg
gtgtcccagcgcttggtggtgcgtgcgcacgcgggcgccgtgtaccacgctgccttctcg
cgctcgggggaatacgtggcgtcgtgcgctggcgacggctacctcaagaagtggaattcc
cgaacgggcgaggagctgatggccacctacgcccacgacgagcccgtcctctgctgcgcc
ttcgcgccaaatgggagggtcatcgccacgggctccgccgatcacaccgtcaagctgtgg
aatgcgcagtctggccggttgctgggcccgcacagggctcacgacggcgaggtgcagcac
tgcacgttcgcgcacgccttccacaagccactgctcgccacgtgctctcaggactcctcc
atcaagctgtgggagtggaaggaacaggggaagggctcggcccttctcggccactctggg
ccggttcgctgctgctgtttctctccggatgaccagcgtctcgtcagctgctctgttgac
tgcacactcaaggtgtggagcgtgaagctgcggcaggaggagcgctctgtcgacgtgcgc
gaatgcgtcgactccgaggatggggcaacgaaagagggggagcgctccctcgccctccga
agttgcgcgtggtccccggacggaaggcggatcgtggccgtcgcagaaaacatcgtcttc
gtgttcaacgctctcacggtcgcgtgcgagaacgtgctcaggactcacgcccactgcacc
atcctggcggtggccttcgctcccgacagcctgcactgcgccgtggggctctcctcctac
tccctagagatgtggaacgtcaagagctgccgtaagacggcggactaccggggtcacgtg
ggctgggtgcatggcgtcgccttctcagccgacggctcgtggctgctgtccgcctcggag
gaccacacagtctccctgtggcaggtgaacggggaggagagtgcggccggcgtgtacctc
aaacgtgacacgcacacgctcttccgggaggacggctctctccgtatcgctgctcctgac
atcaacaactgcctgcgggtggttgacgagacggggcaggtggtgagcgtgagcgaccca
ctgccatcgcgtgttcgctgctgctgcctgagcggggatggaagaattgtggcgatgggc
tgtgagagcggaatcatgcagattgtggacacagagagtggcaacatcctgcacgttttg
gaagggcatacaaagtgcgtgagacaatgccagttcctgatggacggacacgttctcctc
tcctgttccgatgatgcaactctgaggatgtggaggtggagggaagggggggggcagtgc
tccgtgcttgacgagcacacagaggacgtgaagtgcttctgccttctgtcccagagcctc
ctgctctcctgctcatttgacggaaccaccaggttgtgggacctgaacgagctgtcatta
gtgcggacattttgtggccaggagccacacgccgccatcttgtcgtgccaggtgatgccc
agcctaggcctctttgtcgtcacctgcaccgataagacagcacaggtgtggcagctggac
ggtggtgcgatgccgctgcacgtgctacaggggcatacggactgcgttcgcagctgcggt
ttctcccccgacggaaagatcctcgccaccggggacgatgaaggtttcgtgatgttgtgg
agtgtggagagcggccagaagtggagctgccagccgacggctcgccatcacgcctgggtg
actcaggtgtcctttgtgcgagaggggcggatattactctcggcagctgacaacatcaaa
ttttgggatgtggagagtggacgtgtgctacagacgttctaccctcgagggagtctcctg
aagcgtgtgcacacctccccagacggaaatcggttggtcaccgtggactccattgggctg
ctttacatgctgtccctgctgcccttagccccgacagcgtcgacaggacccgtcccacca
gccaaggcgaataatcacgtgcaaaaggaacctccgcgacttgactatgcaaatttcaag
caagccgaagtgcctggctctgaaaattag

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