Petromyzon marinus (sea lamprey): 116950514
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Entry
116950514 CDS
T09614
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase-like isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
116950514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmrn03400
]
116950514
Enzymes [BR:
pmrn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
116950514
DNA repair and recombination proteins [BR:
pmrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
116950514
BRITE hierarchy
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
116950514
NCBI-ProteinID:
XP_032824236
EnsemblRapid:
ENSPMAG00000006306
LinkDB
All DBs
Position
39:9419737..9438692
Genome browser
AA seq
495 aa
AA seq
DB search
MDAVLPAGSEAPPAFGWLNAADPQVLQMQYQRLLAAGMSHHAAGSLVWSGQHSPESPHGE
DQPAHQPAYTQLQNAQPAHCPDFAGRPQAEGTLPEPANPVPVGRGRKRAAPKEPKAPKPP
KAPKEPKPPKPPKEPKAPKPPKEPKPPKEPKPPKEPKPPKEPKPPKEKGRPGRKPGSGKQ
EKITDSFQKVKRKVDRFNGVTEAELLLKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPG
PGNHFWKCLFLSGLTDQLLNHLDDKSLPEKYGIGFTNMVERTTPGSKDLKSKEIREGGKI
LLQKLQKFKPTIAVFNGKCIFEIFFKEVFGEKIKNFQFGEQPNKIPETDIIVYVMPSSSA
RCAQFPRAQDKVHFYIKMKELRNSTKGVTPNEEIQETEYTFDLHKAKEDAKLMAIKEEKH
DPGYDAAYGGAPNESEQSTSCNYAQLQPADISMDSPQQMQDDCPGGGWIIPQFEGQGMDV
PGLPPAPQATPQNPV
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggacgctgtgctacctgcgggtagcgaggccccccctgcctttggctggctaaacgca
gcggacccgcaggtgttgcagatgcagtaccagcgactgctggcggccggcatgagccat
cacgccgctggctccctcgtgtggagcggccagcactcgccggagtctccgcacggagaa
gaccaaccagcgcaccaaccggcttacacgcaactacagaacgcgcagccggcgcattgc
ccggactttgccgggcggccacaagccgaaggcacccttcccgagccggccaaccccgtt
cctgttggcagaggacgcaagagggcggctccaaaggaaccaaaagcaccaaagcctccg
aaggcgcccaaggaacctaaacccccaaagccacccaaggagcccaaagcaccaaagccc
cccaaggagcccaagccccccaaggagcccaagccccccaaggagcccaagccccccaag
gagccgaagccgcccaaggagaagggacgcccagggaggaaacctggcagcggcaagcag
gagaagatcacggactcgtttcagaaggtgaagcggaaggtggatcgattcaacggtgtc
acggaggcggagctactgctgaagactctgccagacatcctcaccttcaacctcgacatt
gtcattattggcatcaaccctggcctgatggcagcctataaggggcatcactaccctgga
ccaggaaaccatttctggaagtgcctattcctgtctggactcacagaccagcttctcaac
catctcgatgacaagtctctgccagaaaaatatggcattggattcaccaacatggtggag
cggaccacgccaggcagcaaagatctcaaaagtaaggagatcagggaaggagggaagatt
cttttgcagaagttgcagaagttcaagccgactatcgcagtcttcaacggcaaatgcatt
tttgaaattttcttcaaggaagtttttggagagaagataaaaaatttccagtttggtgag
caaccaaacaagatccctgaaacggacattatcgtgtacgtgatgccctcgtccagcgct
cgctgtgcccagttcccgcgcgcccaggacaaggttcacttctacatcaagatgaaggag
ctgaggaacagcacgaagggcgtcacacccaatgaagagatccaggagacggagtatacc
ttcgacctgcacaaggctaaagaggatgccaagttgatggccatcaaggaggagaagcac
gacccaggatacgacgcggcttacgggggagcacctaacgagtcggaacagagcacgtcc
tgcaactacgctcagcttcagccagcggacatctccatggactctcctcaacaaatgcag
gacgattgcccgggtggcggctggataatcccgcagttcgaggggcagggcatggacgtg
cccgggctcccgcctgccccgcaagccaccccccagaacccagtttga
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integrated database retrieval system
