Petromyzon marinus (sea lamprey): 116952446
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Entry
116952446 CDS
T09614
Symbol
DDX58
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04622
RIG-I-like receptor signaling pathway
pmrn04623
Cytosolic DNA-sensing pathway
pmrn05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
116952446 (DDX58)
04623 Cytosolic DNA-sensing pathway
116952446 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
116952446 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pmrn04054
]
116952446 (DDX58)
Enzymes [BR:
pmrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116952446 (DDX58)
Pattern recognition receptors [BR:
pmrn04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
116952446 (DDX58)
BRITE hierarchy
Motif
Pfam:
RIG-I_C
RIG-I_C-RD
CARD_2
DEAD
ResIII
Helicase_C
Peptidase_M4_C
AAA_25
Motif
Other DBs
NCBI-GeneID:
116952446
NCBI-ProteinID:
XP_032827686
EnsemblRapid:
ENSPMAG00000009697
LinkDB
All DBs
Position
47:6849811..6904200
Genome browser
AA seq
972 aa
AA seq
DB search
MDESEAMEGVDEAGAQTVDAHMVDKNRREWLKLYEELITSIIRGPYLVTKYSLMKREHCE
EVCAMDTSKGATCGAQLFLSRVLEFGKEGWFVELISALRQAGYNTLADCIDEQNFFKLND
LENQRNIIRLHRTTMESQLLPRDVVMHLEFLRELDRQEIIQETVSYGDIRGTTKLIDHVL
RSDEQDLLKQFKSAIIKAGTGEIADLLEGKELYHDEDVQNESLQYTVDFEKQDCGAVDHC
NESSQKNVDDQECALAQPAEQGTSIDEPKSVKCGNVSLRQYQAELAESALKGENSIIVAP
TDSGKTFVALAICDEHLRQRSGKGPKVIFLAPTLPVFQQQYERFRKHYQDESNRVSVGRV
AGGAETPEPLDLQLKNNDVLIMTPQTLLNGLEKNNVCAIVDFSLIIFDECHHTCKNHPYN
VIMQHYLGVKHGPSAPPLPQIVGLTASVGVGENKSLQGAIDHVLMLCANMDSCVISTVQR
NLSELAQFVPIAQHNILQVGRRRADPFADIIKDIMAKVEDLLLSLNLPDSVPELKKEKER
GTQQYEQWVIKVQREGSMISIPDKELEQKLCWSIFSCTSHLRKYNDALFINEDTRAKDAM
NYLEKFFASLDPEGFIDIDETLANFFKEKLHDLQSCLNNPENENPKLLKLEEILRDEYQM
NAATKSILFVKTRAISEAMESWINEIKTELPHLKPSKLIGRAKSKHHEGMTLNQQSGAVD
EFREEQGSNLLIATSVADEGLDIQRCNLVLLYDYVGNVIKSVQTRGRGRAENSKCMLITT
LKGGLAEKEKVNLLMEKVMYTAIENVQKLDPVTRAKKMEGLQKATLSSAEFQRMLQRFKK
TEEDIYFLHCIKCKELVCKSSDIRLVENTHYTVISSAFMELVDHKPHQKPMSFDGISKIG
KIHHKTCTKDWGITAIYKSLKLPIIKIQSFIFKKENSNVHIVLNKWKDFPGIIAVFSFEE
IGQIGENVLSAE
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacgagtcggaggcgatggagggggtcgacgaagcgggcgcgcagacggtggacgcg
cacatggtggacaagaacaggcgggagtggctgaagctctacgaggagctcatcacgagc
atcatacggggcccgtatctggtcactaagtacagcctcatgaagcgagaacattgcgaa
gaagtatgtgcgatggacaccagcaaaggggcaacgtgtggagctcaactcttcctgtcc
agagtactggagtttggcaaggaagggtggtttgtggagctcatcagtgctctcagacaa
gcaggatataacaccttggcagactgcatagacgaacaaaactttttcaaactgaatgat
ctagagaaccaaagaaacatcatcagactgcatagaaccaccatggagagtcagctgctt
ccacgtgatgtcgtaatgcatttggagttcctgagggagctagacaggcaagaaatcata
caggaaaccgttagttatggggacatccgtggcacaacaaaacttattgatcacgtgctg
cgatctgacgagcaagatttgttgaaacagttcaagtcagccatcatcaaagctggcact
ggagagatagccgatcttcttgaagggaaagaactctatcatgatgaagatgttcaaaat
gaatctttacagtacacggtggactttgagaagcaagattgtggagctgtagaccattgt
aatgaatcatcccaaaagaacgttgatgaccaagaatgtgcactcgcacaaccagcggaa
caggggacgtcaattgatgagccgaagtctgtgaagtgtggaaacgtatcgctacgacag
taccaggctgaactcgcggagtctgctcttaagggagaaaactccatcattgttgcccct
acagacagtggcaagacgtttgtggctttagcgatctgtgacgagcacctgaggcaacgc
tccggaaaaggcccgaaggtgatctttctggcacccacactgcctgtgttccaacaacaa
tacgaacgcttccgcaagcactatcaggacgagagcaacagggtgtccgtgggccgcgtg
gctggaggagccgaaacccccgagcccctagatctgcagctgaagaacaatgacgttctg
atcatgacaccgcagaccctgctcaatgggctcgagaaaaataatgtttgcgccatcgtg
gatttcagcctcatcatcttcgacgagtgccaccatacctgtaaaaaccacccctacaac
gtcatcatgcagcattacctcggcgtcaaacatggacccagtgctccaccactgccacag
atcgtgggccttacagcctctgtcggagttggagaaaataagagcttgcaaggggcaatt
gatcatgtcttaatgctgtgtgccaacatggattcctgtgtcatatccaccgttcagagg
aacctctcagagcttgctcagtttgtgcccatagcacagcacaatatcctacaggttggg
agacgtcgtgctgacccatttgcagacatcatcaaagatattatggccaaagtggaagac
ctcttactttccctgaacttaccagattcggtgcccgagttgaagaaagaaaaggaacgt
ggcacgcagcagtatgagcagtgggtgataaaagtgcagagggaggggagcatgatctcc
attccggacaaggagcttgagcagaaattgtgttggtccatcttctcgtgcacaagccac
ctccggaagtacaatgatgctttgtttattaatgaagatacaagagctaaggacgcaatg
aactatcttgagaaattctttgcatcgctggatcccgaaggtttcattgacatcgatgaa
acactggccaacttttttaaagaaaagcttcacgatctgcagtcatgtctgaacaatcct
gaaaatgaaaatccgaagctcctcaaactggaggaaatactgcgggacgaataccagatg
aatgctgcaaccaaatccatcctctttgtgaagacacgtgccatctccgaggcaatggag
agttggatcaatgaaattaaaacggagttgcctcatctcaagccctccaagctcattgga
cgggctaaaagcaaacaccatgaagggatgactctaaatcagcagtcgggggctgtggac
gaattccgagaggagcagggaagcaatctgctcatcgcgacgagcgtggcagacgagggc
cttgacatccagcgctgcaacctggtgctgctatacgactacgtgggcaacgtcatcaag
agcgtgcagactcgcggacgaggccgtgcagaaaacagcaagtgtatgctgatcaccacc
ttgaagggcggcttggcagagaaagagaaagtgaaccttctgatggagaaggtcatgtac
accgctatcgagaatgtacagaagctcgaccctgtcaccagggctaaaaagatggaaggc
ttgcaaaaggccaccctgagttctgccgaatttcagcgcatgctgcagagatttaaaaag
acagaggaagatatctactttctgcattgcatcaagtgcaaagaactagtctgcaaatca
agcgacatccgcttagttgagaatacacactacactgtgatttcttctgccttcatggag
ctggtagaccacaagccccaccaaaaacctatgtcttttgatggaatcagtaagattgga
aaaattcaccataagacatgcactaaagattgggggataacggccatctacaagagcttg
aagttgcccatcatcaagatccagagcttcattttcaagaaggagaacagcaatgttcat
atcgtcctcaacaagtggaaagattttccaggaataattgcagtgttctcttttgaggaa
attggacagatcggggaaaatgtcctttcggctgagtaa
DBGET
integrated database retrieval system
