Petromyzon marinus (sea lamprey): 116953931 Help Entry 116953931         CDS       T09614                                  Name (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism pmrn  Petromyzon marinus (sea lamprey) Pathway pmrn04115   p53 signaling pathway pmrn04145   Phagosome pmrn04148   Efferocytosis pmrn04350   TGF-beta signaling pathway pmrn04510   Focal adhesion pmrn04512   ECM-receptor interaction pmrn04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:pmrn00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     116953931   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     116953931  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     116953931    04148 Efferocytosis     116953931   09143 Cell growth and death    04115 p53 signaling pathway     116953931   09144 Cellular community - eukaryotes    04510 Focal adhesion     116953931   09142 Cell motility    04820 Cytoskeleton in muscle cells     116953931  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:pmrn04131]     116953931   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:pmrn00536]     116953931 Membrane trafficking [BR:pmrn04131]  Endocytosis   Phagocytosis    Opsonins     116953931 Glycosaminoglycan binding proteins [BR:pmrn00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    116953931 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC EGF_3 TSP1_CCN cEGF Laminin_G_3 TSP1_ADAMTS TSP1_CFP_C Motif Other DBs NCBI-GeneID:  116953931 NCBI-ProteinID:  XP_032830146 UniProt:  A0AAJ7U7M0 LinkDB All DBs Position 53:4150664..4200162 Genome browser AA seq 1167 aa AA seqDB search MCLFKGWPAVVALVLLNITGLHGFEYNGGSGGSGGGMRAFDLFELTKLSRSNAGVKPVKG PERGPAFKIVKAAKIPAVTGQPLEELVEALRRDEGFTFQATLRQEKRSTGTLVSVGPLAR TSPRLFEIISNGRADTLDLAYAVNGEQSVFSFEEVELATPQWKNVTLHVSGEDAELYVGC DRVDTLTLEGLNFEQLAAEGNALRLGKGALKDADDFKGALQNVRFVFGTTVEDILRSKGC PAAQRTPVLAGNKLNFMSPQLGGLGDQCDMSCNAVSEMVRELRGIQRAVTTLVSGFDDVR NQTDFISKGIGFNKKGECHFEGTQFANGTNWTVDTCTSCTCEESVTFCRQISCQEVSCNN ATTPEGECCPTCYVLEEGWSPWSEWTSCTVSCGRGLQQRGRSCDRIKHECQGPSIQTRTC HQRECDKRIRQDGGWSHWSPWSSCSATCGVGSSTRMRLCNSPTPQLGGEDCAGSGRDTRE CNLMPCPVDGQWGPWSLWSTCSVTCAGGSRTRLRLCNNPEPKHGGRRCVGLSSDTGVCNT QDCPIDGCLSNPCFAGSTCISFVDGSWKCGACPLGYRGDGLHCEDIDECTEVPDVCFSTT SASRCTNLEPGFKCLPCPPRYSGTQPQGLGLEDAKTNKQVCEPKNPCEDGSHNCHVDADC VYLGVHTELVFRCECKTGFAGNGFVCGEDIDLDGWPNKELPCVANATYHCLKDNCPELPN SGQEDHDKDGFGDACDNDDDNDGYPDDRDNCPMLFNPRQYDRDRDTVGDLCDNCPERPNA DQRDTDRNGVGDACSPDIDGDSVLNEGDNCPYVYNSDQRDFDTDGVGDMCDNCPLQYNPD QRDSDSDLVGDTCDSNEDIDEDGHQNNLDNCPYIPNSNQADHDGDGIGDACDHDDDNDGV PDERDNCRLVANPDQLDSNGDGRGDICWSDFDNDNVTDTEDVCPENFAITSTDFQRFQMV PLDPTGTSQIDPNWVVRHQGKELVQEVNCDPGLAIGYDEFNAVDFSGTFYINTDRDDDYA GFVFGYQSSARFYVVMWKQITQSYWQDTPTRAQGFAGLQIKVVNSTTGPGEHLRNALWHT GNTPGQVRLLWHDPKTIGWKDYTAYRWQLTHRPKSGLIRVVMYEGRHIMADSGPLYDKTY TGGRLGLFVFSQESVYFSDMKYKCKDW NT seq 3504 nt NT seq  +upstreamnt  +downstreamnt atgtgtttgttcaaaggatggccggcggtagtggcacttgtgttactcaacatcaccgga cttcacggctttgagtacaacggcggcagcggaggcagcggcggcggaatgagagcgttc gacctcttcgagctcaccaagctgagccgcagcaatgccggcgtgaagccagtcaagggg cccgagcggggccccgccttcaagatcgtcaaggcggccaagatcccggcggtgaccggc cagcccctcgaggagctcgtggaggcgctgcgccgcgacgagggcttcaccttccaggcg acgctgcgacaggagaagcgtagcaccggcacgctcgtgtccgtcgggcccctggcgagg acgtcgccgcgcctcttcgagatcatctcgaacgggcgcgccgacacgctcgatctggcg tacgcggtgaacggcgagcagagcgtcttctccttcgaggaggtggagctggcgacgccg cagtggaagaacgtgacgctgcacgtgtccggcgaggacgccgagctgtacgtgggctgc gatcgcgtcgacacgctcaccctggagggtctcaacttcgagcagctcgcggccgagggg aacgcgctgcggctgggcaagggtgccctcaaggacgccgacgacttcaagggggccttg caaaacgttcgcttcgtgttcggcaccacggtggaggacatcctacgaagcaagggctgc cccgccgcccagcggacaccggtgctggcaggaaacaagctgaactttatgagcccgcag ctcgggggtttgggcgaccagtgcgacatgtcctgcaacgccgtgtcggagatggtccgg gagctccgtggcattcagagggcggtcaccacgttagtgagcggattcgacgatgtgaga aaccagacggacttcatcagcaaggggattggcttcaacaagaaaggcgagtgccacttc gagggaacgcagtttgccaacggcaccaactggacggtggacacctgcacgtcctgcaca tgcgaggaatccgtgacattttgccggcaaatcagctgccaagaggtttcgtgcaacaac gcgaccacgccggagggcgagtgctgcccaacgtgctacgtgctggaggagggctggtcg ccgtggtccgagtggacgtcgtgcactgtgtcttgcgggcgcgggctgcagcagcgcggc cgctcgtgcgaccgcatcaagcacgagtgccagggcccgtccatccagacgcgcacgtgc caccagcgcgagtgcgataagcgcatccgccaggacggcggctggagccactggtcgccg tggtcttcgtgctcggcgacgtgcggcgtgggctccagcacgcgcatgcggctctgcaac tccccgacgccgcagctgggcggcgaggactgcgcgggcagtgggcgcgacaccagggag tgcaatctcatgccctgccccgtggacgggcagtggggcccctggtctctgtggtcgacg tgctccgtgacctgcgccgggggctcgcggacgcgcctgcgcctctgcaacaaccccgag cccaagcacggcgggcggcgctgcgtgggactcagctccgacaccggcgtctgcaacacc caggactgtcccatcgacggctgcctctccaacccgtgcttcgcgggaagcacgtgcatc agcttcgtggacggctcgtggaagtgcggcgcctgcccgctcggttaccgtggcgatggc ctgcactgcgaggacatcgacgagtgcacggaggtgccggatgtctgcttctcgacgacg agtgcgtcgcgctgcaccaacctggaaccgggattcaagtgcctcccgtgccccccgcgc tactcgggcacccagccccagggtctcgggctggaggacgcaaagaccaataagcaggtg tgcgagcctaagaacccatgcgaggacgggagccataattgccacgtggacgcggactgc gtgtacctgggcgtgcacacggagctcgtgttccgctgcgagtgcaagacggggttcgcc ggcaacggcttcgtgtgcggcgaggacatagacctcgacgggtggcccaacaaggagctg ccctgcgtggccaacgccacctaccactgcctcaaggacaactgtcctgaactgcccaac tccgggcaggaggaccacgacaaggacggctttggcgacgcctgcgacaacgacgacgac aatgatggatatcccgatgacagggacaactgcccgatgctgttcaacccgcggcagtac gacagagaccgcgacaccgtcggtgacctttgcgacaattgccccgaacgccccaatgcc gaccaacgcgacacggaccgcaacggcgtgggagacgcgtgctcgcccgacatcgacgga gacagcgttctcaacgagggcgacaactgcccgtacgtgtacaacagcgaccagcgcgac ttcgacacggacggcgtgggagacatgtgcgacaactgtcccctgcagtacaaccccgac cagcgcgattccgactcggacctggtgggcgacacgtgcgacagcaacgaggacatcgac gaggacggccaccagaacaacctcgacaactgcccgtacatccccaactcgaaccaggcc gaccacgacggcgacggcatcggagacgcctgtgaccacgacgacgacaacgacggcgtt ccagacgagcgcgacaactgccgcctcgtcgccaaccccgaccagctcgactccaacggt gacggccgcggggacatctgctggtccgactttgacaacgacaacgtgacggataccgag gacgtgtgcccggaaaacttcgccatcaccagcacggacttccagcgcttccagatggtg ccgctcgaccccacgggcacctcgcagatcgaccccaactgggtggtgcgccaccagggc aaggagctcgtgcaggaggtcaactgcgacccggggctcgccattggctacgacgagttc aacgcggtggacttcagcggaacgttctacatcaacacggaccgcgacgacgactacgcg ggcttcgtgttcggctaccagtcgagcgcgcgcttctacgtggtcatgtggaagcagatc acgcagtcctactggcaggacacgcccacgcgcgcccagggcttcgccggcctgcagatc aaggtggtgaactccacgacggggcccggcgagcacctccgcaacgccctctggcacacc ggcaacacccccgggcaggttcgtctgctgtggcacgacccaaaaaccatcggctggaag gattacacggcgtacaggtggcagctgactcaccggcccaaatccggactcatcagggtg gtgatgtacgagggcaggcacatcatggccgactcgggccccctgtacgacaagacgtac accgggggacgcctcggcctgttcgtcttctcccaggagagcgtctacttctccgacatg aagtacaagtgcaaagattggtag

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