KEGG   Petromyzon marinus (sea lamprey): 116957399
Entry
116957399         CDS       T09614                                 
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
pmrn  Petromyzon marinus (sea lamprey)
Pathway
pmrn04010  MAPK signaling pathway
pmrn04137  Mitophagy - animal
pmrn04141  Protein processing in endoplasmic reticulum
pmrn04210  Apoptosis
pmrn04217  Necroptosis
pmrn04621  NOD-like receptor signaling pathway
pmrn04622  RIG-I-like receptor signaling pathway
pmrn04920  Adipocytokine signaling pathway
pmrn05132  Salmonella infection
pmrn05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pmrn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    116957399
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    116957399
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    116957399
  09143 Cell growth and death
   04210 Apoptosis
    116957399
   04217 Necroptosis
    116957399
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    116957399
   04622 RIG-I-like receptor signaling pathway
    116957399
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    116957399
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    116957399
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    116957399
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmrn03019]
    116957399
   04121 Ubiquitin system [BR:pmrn04121]
    116957399
Enzymes [BR:pmrn01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     116957399
Messenger RNA biogenesis [BR:pmrn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     116957399
Ubiquitin system [BR:pmrn04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    116957399
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd TRAF2_zf TRAF3_RING zf-TRAF zf-C3HC4 Sina_ZnF zf-C3HC4_4 zf-C3HC4_2 DUF641 zf-RING_UBOX
Other DBs
NCBI-GeneID: 116957399
NCBI-ProteinID: XP_032835409
EnsemblRapid: ENSPMAG00000027478
LinkDB
Position
74:2384166..2410527
AA seq 564 aa
MLMSKTILLTPSSPGPSEPCMAHAVPASAHGPESIAGRDAVGHDGQGDETAEAEAEAAAA
AGLNPAILGSAPDPKHLCCHCCLLLRTPVQTQCGHRYCQACLAQLVRQRHITCAKCTDEN
VFDPHLSILDDTKAFHDRAAQREIDCLSARCINEGCPWTGTVKEYWSVHEELCEFSTLPC
PFQDVGCTAKVSRGELSRHEETAVPLHLRLLLAPLASLRSALLVPDRFALENGAADAGAV
PQRVGTVDSRVRKLEELLDRLNINGGDGGGGSGGWNKADSGINSASLASISPRRGQAGAA
KGGRKKGAAAAAAAAPAGGGAEEEAGAVVLGRLARVERMLTAFENIVKVLDRETERVAVA
QRETERQRREEQQQLHAAQAKMREVERQLAAKEAALAELRGRLLSLEAATFDGVFLWKIS
SFRQRSRDASEGRNLAFYSPAFYTSQHGYKMCLRLYPNGDGAGRGTHLSLFFVIMKGDHD
ALLPWPFKYKVTMMLLDQDRREHVIDAFRPDVTSSSFQRPVGELNVASGCPLFCPLARLQ
GQQRQAYVRDDTIFIRCIVETDGV
NT seq 1695 nt   +upstreamnt  +downstreamnt
atgttgatgagtaaaacaatcttacttacaccctcatctccgggcccctctgagccgtgc
atggcccacgcggtgccagcgagcgcacatgggccggagtcgatcgccgggagggacgcc
gtcggccacgacggccagggggacgagacggcggaggcagaggcggaggctgcggctgcg
gcgggactgaacccggccatcctgggctcggcgcccgaccccaagcacctgtgctgccac
tgctgcctgctgctgcgcacgccggtgcagacgcaatgcggccaccgctactgccaggcc
tgcctggctcagctggttcggcagaggcacatcacctgcgccaaatgcacagatgaaaac
gtgttcgacccccacctgtccattctcgacgacacgaaggcctttcacgacagggcggct
caacgggagatcgactgcctctccgctcgctgcattaatgaaggctgcccctggactgga
accgtcaaggagtactggtctgtgcacgaggagctctgcgagttctccaccctgccctgc
cccttccaggacgtcggctgcacggccaaggtctcgcgcggcgagctttcccggcacgag
gaaacggcggtgccgctacacctgcggctgctgctggcgccgctcgcgtccctccgctcg
gcgctcctcgtcccggaccgcttcgccctcgagaacggcgccgccgacgccggcgccgtc
ccccagcgggtcggcactgtcgattcgcgcgtgcgcaagctggaggagctcctcgaccgg
ctcaacatcaacggcggcgacggaggcggcggcagcggcggctggaacaaggcggactcc
gggataaacagcgccagcttggcgtcaatatcgccaagacgggggcaagccggcgctgcg
aagggcggtcgcaagaagggagcggcggcggcggcggcggcggcgccggccgggggaggg
gcggaggaggaggctggtgcggtggtgctggggcggctggcgcgggtggagcgcatgctc
acggcgttcgagaacatcgtcaaggtgctggaccgcgagacggagagggtggcggtggcg
cagcgggagacggagcgccagcggcgggaggagcagcagcagctgcacgcggcgcaggcc
aagatgcgggaggtggagcgccagctggcggccaaggaggcggcgctggccgagctgcgg
ggccgcctgctctcgctcgaggcagccaccttcgacggagtcttcctgtggaagatctcc
agcttccgccagcgcagtcgcgacgccagcgaagggcgcaaccttgccttctactcgcca
gcattctatacgagccagcatggatacaagatgtgcctccggctctaccccaatggggac
ggagccggccgtggcacccacctctcgctcttcttcgtcatcatgaagggggatcacgat
gccctcttgccgtggccattcaagtacaaggtgacaatgatgctgctggaccaagaccgg
cgggagcacgtgatcgacgcgttccggcccgacgtgacgtcgtcctcattccagcgcccc
gtgggcgagctgaacgtggccagcggctgccccctcttctgcccgctcgcccggctgcag
ggccagcagcggcaggcctacgtgcgcgacgacaccatcttcatccgctgcatcgtcgag
accgacggggtctga

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