Petromyzon marinus (sea lamprey): 116957399
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Entry
116957399 CDS
T09614
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04010
MAPK signaling pathway
pmrn04137
Mitophagy - animal
pmrn04141
Protein processing in endoplasmic reticulum
pmrn04210
Apoptosis
pmrn04217
Necroptosis
pmrn04621
NOD-like receptor signaling pathway
pmrn04622
RIG-I-like receptor signaling pathway
pmrn04920
Adipocytokine signaling pathway
pmrn05132
Salmonella infection
pmrn05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116957399
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116957399
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
116957399
09143 Cell growth and death
04210 Apoptosis
116957399
04217 Necroptosis
116957399
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
116957399
04622 RIG-I-like receptor signaling pathway
116957399
09152 Endocrine system
04920 Adipocytokine signaling pathway
116957399
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
116957399
09171 Infectious disease: bacterial
05132 Salmonella infection
116957399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116957399
04121 Ubiquitin system [BR:
pmrn04121
]
116957399
Enzymes [BR:
pmrn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116957399
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
116957399
Ubiquitin system [BR:
pmrn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
116957399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
TRAF2_zf
TRAF3_RING
zf-TRAF
zf-C3HC4
Sina_ZnF
zf-C3HC4_4
zf-C3HC4_2
DUF641
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
116957399
NCBI-ProteinID:
XP_032835409
EnsemblRapid:
ENSPMAG00000027478
LinkDB
All DBs
Position
74:2384166..2410527
Genome browser
AA seq
564 aa
AA seq
DB search
MLMSKTILLTPSSPGPSEPCMAHAVPASAHGPESIAGRDAVGHDGQGDETAEAEAEAAAA
AGLNPAILGSAPDPKHLCCHCCLLLRTPVQTQCGHRYCQACLAQLVRQRHITCAKCTDEN
VFDPHLSILDDTKAFHDRAAQREIDCLSARCINEGCPWTGTVKEYWSVHEELCEFSTLPC
PFQDVGCTAKVSRGELSRHEETAVPLHLRLLLAPLASLRSALLVPDRFALENGAADAGAV
PQRVGTVDSRVRKLEELLDRLNINGGDGGGGSGGWNKADSGINSASLASISPRRGQAGAA
KGGRKKGAAAAAAAAPAGGGAEEEAGAVVLGRLARVERMLTAFENIVKVLDRETERVAVA
QRETERQRREEQQQLHAAQAKMREVERQLAAKEAALAELRGRLLSLEAATFDGVFLWKIS
SFRQRSRDASEGRNLAFYSPAFYTSQHGYKMCLRLYPNGDGAGRGTHLSLFFVIMKGDHD
ALLPWPFKYKVTMMLLDQDRREHVIDAFRPDVTSSSFQRPVGELNVASGCPLFCPLARLQ
GQQRQAYVRDDTIFIRCIVETDGV
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgttgatgagtaaaacaatcttacttacaccctcatctccgggcccctctgagccgtgc
atggcccacgcggtgccagcgagcgcacatgggccggagtcgatcgccgggagggacgcc
gtcggccacgacggccagggggacgagacggcggaggcagaggcggaggctgcggctgcg
gcgggactgaacccggccatcctgggctcggcgcccgaccccaagcacctgtgctgccac
tgctgcctgctgctgcgcacgccggtgcagacgcaatgcggccaccgctactgccaggcc
tgcctggctcagctggttcggcagaggcacatcacctgcgccaaatgcacagatgaaaac
gtgttcgacccccacctgtccattctcgacgacacgaaggcctttcacgacagggcggct
caacgggagatcgactgcctctccgctcgctgcattaatgaaggctgcccctggactgga
accgtcaaggagtactggtctgtgcacgaggagctctgcgagttctccaccctgccctgc
cccttccaggacgtcggctgcacggccaaggtctcgcgcggcgagctttcccggcacgag
gaaacggcggtgccgctacacctgcggctgctgctggcgccgctcgcgtccctccgctcg
gcgctcctcgtcccggaccgcttcgccctcgagaacggcgccgccgacgccggcgccgtc
ccccagcgggtcggcactgtcgattcgcgcgtgcgcaagctggaggagctcctcgaccgg
ctcaacatcaacggcggcgacggaggcggcggcagcggcggctggaacaaggcggactcc
gggataaacagcgccagcttggcgtcaatatcgccaagacgggggcaagccggcgctgcg
aagggcggtcgcaagaagggagcggcggcggcggcggcggcggcgccggccgggggaggg
gcggaggaggaggctggtgcggtggtgctggggcggctggcgcgggtggagcgcatgctc
acggcgttcgagaacatcgtcaaggtgctggaccgcgagacggagagggtggcggtggcg
cagcgggagacggagcgccagcggcgggaggagcagcagcagctgcacgcggcgcaggcc
aagatgcgggaggtggagcgccagctggcggccaaggaggcggcgctggccgagctgcgg
ggccgcctgctctcgctcgaggcagccaccttcgacggagtcttcctgtggaagatctcc
agcttccgccagcgcagtcgcgacgccagcgaagggcgcaaccttgccttctactcgcca
gcattctatacgagccagcatggatacaagatgtgcctccggctctaccccaatggggac
ggagccggccgtggcacccacctctcgctcttcttcgtcatcatgaagggggatcacgat
gccctcttgccgtggccattcaagtacaaggtgacaatgatgctgctggaccaagaccgg
cgggagcacgtgatcgacgcgttccggcccgacgtgacgtcgtcctcattccagcgcccc
gtgggcgagctgaacgtggccagcggctgccccctcttctgcccgctcgcccggctgcag
ggccagcagcggcaggcctacgtgcgcgacgacaccatcttcatccgctgcatcgtcgag
accgacggggtctga
DBGET
integrated database retrieval system