Petromyzon marinus (sea lamprey): 116957458
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Entry
116957458 CDS
T09614
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Pathway
pmrn04010
MAPK signaling pathway
pmrn04137
Mitophagy - animal
pmrn04141
Protein processing in endoplasmic reticulum
pmrn04210
Apoptosis
pmrn04217
Necroptosis
pmrn04621
NOD-like receptor signaling pathway
pmrn04622
RIG-I-like receptor signaling pathway
pmrn04920
Adipocytokine signaling pathway
pmrn05132
Salmonella infection
pmrn05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116957458
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116957458
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
116957458
09143 Cell growth and death
04210 Apoptosis
116957458
04217 Necroptosis
116957458
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
116957458
04622 RIG-I-like receptor signaling pathway
116957458
09152 Endocrine system
04920 Adipocytokine signaling pathway
116957458
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
116957458
09171 Infectious disease: bacterial
05132 Salmonella infection
116957458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmrn03019
]
116957458
04121 Ubiquitin system [BR:
pmrn04121
]
116957458
Enzymes [BR:
pmrn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116957458
Messenger RNA biogenesis [BR:
pmrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
116957458
Ubiquitin system [BR:
pmrn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
116957458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_3
TRAF2_zf
zf-C3HC4_4
zf-C3HC4
TRAF_BIRC3_bd
zf-C3HC4_2
zf-TRAF_2
TMCO5
Motif
Other DBs
NCBI-GeneID:
116957458
NCBI-ProteinID:
XP_032835502
EnsemblRapid:
ENSPMAG00000032987
LinkDB
All DBs
Position
74:complement(1951464..1984427)
Genome browser
AA seq
689 aa
AA seq
DB search
MCVCAQEVLCLRRPVDAFLKSVQFGEQRVERDDEVWRDYDVRLLLLLRAPRSDMAGLISR
GLSPCTQTPTVSPHPGPSSHAATALEKAGAGPGGGGRGGGGGGEGIATIMGEALAVLPTP
VRDGYPLEALQREPDLKYLCGACGRLLRAAVQAPCGHRFCHGCHSKLATRPEQWLCPRCQ
EEGTHEEELYSSPNNQCFPDRATRREVDQLPARCTNPGCSWSGIVGDYDGHESACELRWT
TCPACGGRVRHRELGEHGQKSCPARTALCRHCRAPCTAQELREHDLICPKFPTTCTACGK
RKIPREKLPLHEKSCLRVKRPCRFADIGCPFQAEADKLAGHEQLATASHVAILRSFLLHL
RGLLPPPAAAAAAEAAGGGGGGGGAAAAASVPQLDPALGGRLSKLALRLSRLEVAVAERG
GRAAARVRRPSAAADGAEGGAGAGEEEAAVPAALEERCARLERSLGPLEATVAALDRQAE
RCSSAAREADTRRQAERAAVATLAGKLQALERKLALREVALADMTLRLSALEVSSHDGSF
VWRVGDVRRRRGDAGSGRQLAVYSPAFFTSRYGYKMCLRLYPNGDGAGKGSHLSLFFVLM
RGDHDAMLRWPFRQKVTLMLLDQGPRRDHVIDAFRPDATTSSFQRPTGDLNVASGCPLFC
PLGRLVSSEQTYVRDDTLFIKCVVDTADL
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgtgtgtgctcaggaagtgctttgtttgaggcggccagtagatgcgttcctgaaa
agcgtccagtttggcgaacaacgcgttgaacgtgacgatgaagtatggcgagattacgac
gtacgactgctgctgctgctacgcgcaccacgcagtgacatggcgggactaatatcacga
gggctttcgccatgcacgcagacacccacggtctccccacacccagggccttcctcacac
gctgccacggctctggagaaagcaggagcagggccaggaggaggtggacgaggaggagga
ggaggaggagaaggaattgcgacgatcatgggggaggcgttggccgtgttgccgaccccc
gtgcgggacgggtacccgctggaggcactgcagcgcgagcccgacttaaagtatctgtgc
ggggcctgcggccgcctgctcagggcggccgtgcaggcgccctgcggccaccgcttttgc
cacgggtgccacagcaagcttgccacgagaccagagcaatggttgtgcccccggtgtcag
gaagaaggcactcacgaagaggaattgtactcatcgcccaacaaccagtgttttcctgac
cgggcgactcgccgtgaggtggaccaacttcccgctcgctgtaccaacccgggctgctca
tggtccggcatcgtgggagactacgatggtcacgagtcggcatgtgagctccgctggacc
acgtgccctgcgtgtggtggccgcgtgcgacaccgcgagttgggggagcatggccagaag
agctgccctgcacgcacagcgctctgcaggcactgtcgggcgccctgcaccgcacaggag
ctgcgggaacatgacctgatctgcccaaagttccccacgacctgcactgcgtgcgggaaa
cgcaagatacccagagagaagctgcctctgcatgagaagtcgtgtctccgcgtgaagaga
ccctgccgcttcgcagacatcggctgcccctttcaggccgaggctgacaagcttgcgggg
cacgagcagttggccaccgcctcccacgtcgccatcctgcgctccttcctgctgcacttg
cgcggcctcctgccgcctccggccgccgccgccgccgccgaagcagccggcggcggcggc
ggcggcggcggtgcggctgcggcggcatcggtcccgcagttggacccggctttgggcggc
cgactgtccaagctggcgctgaggttgtcccggttggaggtggcggtggcggagaggggc
gggcgggccgccgctcgtgtcaggaggccgtcggcggccgccgatggggctgaaggagga
gccggcgccggcgaggaggaggcggcggtgccagcggcgctggaggagcgctgcgccaga
ctcgagcgctcgctgggcccgctggaggcgaccgtcgccgccttggaccgccaggccgag
cgctgctcctccgcggcgcgggaggccgacactcggcggcaggccgagcgtgcagcggtc
gccacgctcgccggcaagctgcaggcgctggagcgcaagctggcgctgcgggaggtggcg
ctggccgacatgacgctgcgcctctccgccctcgaggtctcgtcccacgacggctccttc
gtgtggagggtcggcgacgtgcggcggcgccgcggcgacgccggcagcgggcggcagctc
gccgtctactcgccagcgttcttcacgagccgctacggctacaagatgtgcctccgcttg
taccccaacggtgacggcgctggcaagggctcccacctctcgctcttcttcgtcctcatg
cggggcgaccacgacgccatgctgcgctggcccttccgccagaaggtgacgctgatgctg
ctggaccagggcccccgtcgtgaccacgtcatcgacgccttccgcccggacgcgaccacc
tcctccttccagcgccccaccggagacctcaacgtggccagcggctgcccccttttctgc
cccctcggccgcctagtttcgtcggagcagacctacgtgcgggacgacaccttgttcatc
aagtgcgtggtggacacggccgacctgtga
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