KEGG   Petromyzon marinus (sea lamprey): 116957458
Entry
116957458         CDS       T09614                                 
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
pmrn  Petromyzon marinus (sea lamprey)
Pathway
pmrn04010  MAPK signaling pathway
pmrn04137  Mitophagy - animal
pmrn04141  Protein processing in endoplasmic reticulum
pmrn04210  Apoptosis
pmrn04217  Necroptosis
pmrn04621  NOD-like receptor signaling pathway
pmrn04622  RIG-I-like receptor signaling pathway
pmrn04920  Adipocytokine signaling pathway
pmrn05132  Salmonella infection
pmrn05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pmrn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    116957458
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    116957458
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    116957458
  09143 Cell growth and death
   04210 Apoptosis
    116957458
   04217 Necroptosis
    116957458
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    116957458
   04622 RIG-I-like receptor signaling pathway
    116957458
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    116957458
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    116957458
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    116957458
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmrn03019]
    116957458
   04121 Ubiquitin system [BR:pmrn04121]
    116957458
Enzymes [BR:pmrn01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     116957458
Messenger RNA biogenesis [BR:pmrn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     116957458
Ubiquitin system [BR:pmrn04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    116957458
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4_3 TRAF2_zf zf-C3HC4_4 zf-C3HC4 TRAF_BIRC3_bd zf-C3HC4_2 zf-TRAF_2 TMCO5
Other DBs
NCBI-GeneID: 116957458
NCBI-ProteinID: XP_032835502
EnsemblRapid: ENSPMAG00000032987
LinkDB
Position
74:complement(1951464..1984427)
AA seq 689 aa
MCVCAQEVLCLRRPVDAFLKSVQFGEQRVERDDEVWRDYDVRLLLLLRAPRSDMAGLISR
GLSPCTQTPTVSPHPGPSSHAATALEKAGAGPGGGGRGGGGGGEGIATIMGEALAVLPTP
VRDGYPLEALQREPDLKYLCGACGRLLRAAVQAPCGHRFCHGCHSKLATRPEQWLCPRCQ
EEGTHEEELYSSPNNQCFPDRATRREVDQLPARCTNPGCSWSGIVGDYDGHESACELRWT
TCPACGGRVRHRELGEHGQKSCPARTALCRHCRAPCTAQELREHDLICPKFPTTCTACGK
RKIPREKLPLHEKSCLRVKRPCRFADIGCPFQAEADKLAGHEQLATASHVAILRSFLLHL
RGLLPPPAAAAAAEAAGGGGGGGGAAAAASVPQLDPALGGRLSKLALRLSRLEVAVAERG
GRAAARVRRPSAAADGAEGGAGAGEEEAAVPAALEERCARLERSLGPLEATVAALDRQAE
RCSSAAREADTRRQAERAAVATLAGKLQALERKLALREVALADMTLRLSALEVSSHDGSF
VWRVGDVRRRRGDAGSGRQLAVYSPAFFTSRYGYKMCLRLYPNGDGAGKGSHLSLFFVLM
RGDHDAMLRWPFRQKVTLMLLDQGPRRDHVIDAFRPDATTSSFQRPTGDLNVASGCPLFC
PLGRLVSSEQTYVRDDTLFIKCVVDTADL
NT seq 2070 nt   +upstreamnt  +downstreamnt
atgtgtgtgtgtgctcaggaagtgctttgtttgaggcggccagtagatgcgttcctgaaa
agcgtccagtttggcgaacaacgcgttgaacgtgacgatgaagtatggcgagattacgac
gtacgactgctgctgctgctacgcgcaccacgcagtgacatggcgggactaatatcacga
gggctttcgccatgcacgcagacacccacggtctccccacacccagggccttcctcacac
gctgccacggctctggagaaagcaggagcagggccaggaggaggtggacgaggaggagga
ggaggaggagaaggaattgcgacgatcatgggggaggcgttggccgtgttgccgaccccc
gtgcgggacgggtacccgctggaggcactgcagcgcgagcccgacttaaagtatctgtgc
ggggcctgcggccgcctgctcagggcggccgtgcaggcgccctgcggccaccgcttttgc
cacgggtgccacagcaagcttgccacgagaccagagcaatggttgtgcccccggtgtcag
gaagaaggcactcacgaagaggaattgtactcatcgcccaacaaccagtgttttcctgac
cgggcgactcgccgtgaggtggaccaacttcccgctcgctgtaccaacccgggctgctca
tggtccggcatcgtgggagactacgatggtcacgagtcggcatgtgagctccgctggacc
acgtgccctgcgtgtggtggccgcgtgcgacaccgcgagttgggggagcatggccagaag
agctgccctgcacgcacagcgctctgcaggcactgtcgggcgccctgcaccgcacaggag
ctgcgggaacatgacctgatctgcccaaagttccccacgacctgcactgcgtgcgggaaa
cgcaagatacccagagagaagctgcctctgcatgagaagtcgtgtctccgcgtgaagaga
ccctgccgcttcgcagacatcggctgcccctttcaggccgaggctgacaagcttgcgggg
cacgagcagttggccaccgcctcccacgtcgccatcctgcgctccttcctgctgcacttg
cgcggcctcctgccgcctccggccgccgccgccgccgccgaagcagccggcggcggcggc
ggcggcggcggtgcggctgcggcggcatcggtcccgcagttggacccggctttgggcggc
cgactgtccaagctggcgctgaggttgtcccggttggaggtggcggtggcggagaggggc
gggcgggccgccgctcgtgtcaggaggccgtcggcggccgccgatggggctgaaggagga
gccggcgccggcgaggaggaggcggcggtgccagcggcgctggaggagcgctgcgccaga
ctcgagcgctcgctgggcccgctggaggcgaccgtcgccgccttggaccgccaggccgag
cgctgctcctccgcggcgcgggaggccgacactcggcggcaggccgagcgtgcagcggtc
gccacgctcgccggcaagctgcaggcgctggagcgcaagctggcgctgcgggaggtggcg
ctggccgacatgacgctgcgcctctccgccctcgaggtctcgtcccacgacggctccttc
gtgtggagggtcggcgacgtgcggcggcgccgcggcgacgccggcagcgggcggcagctc
gccgtctactcgccagcgttcttcacgagccgctacggctacaagatgtgcctccgcttg
taccccaacggtgacggcgctggcaagggctcccacctctcgctcttcttcgtcctcatg
cggggcgaccacgacgccatgctgcgctggcccttccgccagaaggtgacgctgatgctg
ctggaccagggcccccgtcgtgaccacgtcatcgacgccttccgcccggacgcgaccacc
tcctccttccagcgccccaccggagacctcaacgtggccagcggctgcccccttttctgc
cccctcggccgcctagtttcgtcggagcagacctacgtgcgggacgacaccttgttcatc
aagtgcgtggtggacacggccgacctgtga

DBGET integrated database retrieval system