Pasteurella multocida subsp. multocida Pm70: PM1716
Help
Entry
PM1716 CDS
T00046
Symbol
lig
Name
(GenBank) Lig
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmu
Pasteurella multocida subsp. multocida Pm70
Pathway
pmu03030
DNA replication
pmu03410
Base excision repair
pmu03420
Nucleotide excision repair
pmu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PM1716 (lig)
03410 Base excision repair
PM1716 (lig)
03420 Nucleotide excision repair
PM1716 (lig)
03430 Mismatch repair
PM1716 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmu03032
]
PM1716 (lig)
03400 DNA repair and recombination proteins [BR:
pmu03400
]
PM1716 (lig)
Enzymes [BR:
pmu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PM1716 (lig)
DNA replication proteins [BR:
pmu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PM1716 (lig)
DNA repair and recombination proteins [BR:
pmu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PM1716 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PM1716 (lig)
MMR (mismatch excision repair)
DNA ligase
PM1716 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PM1716 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
DNA_pol_lambd_f
DZR_2
5_3_exonuc
GFRP
Motif
Other DBs
NCBI-ProteinID:
AAK03800
UniProt:
Q9CKA9
LinkDB
All DBs
Position
complement(1923922..1925943)
Genome browser
AA seq
673 aa
AA seq
DB search
MTDSIKLEIEQLRQTLRYHEYQYHVLDNPQIPDAEYDRLFHRLKTLEQQYPQWFSPDSPT
QRVGAKPLSAFAQVQHEMPMLSLDNAFSDEELHAFVKRIQDRLVFSPKLLEFCCEPKLDG
LAVSILYVDGKLTQAATRGDGSTGEDITLNIRTVRNIPLQLLMENPPTRLEVRGEVFMSQ
AGFEVLNEKALARGEKTFANPRNAAAGSLRQLDPRITSQRPLLLNAYSIGVAEGIDLPDT
HFERLQWLKSIGIPVNNEIQLCEGTENVLNFYRAIMQKRSTLGYDIDGTVIKVNDIALQE
ELGFISKAPRWAIAYKFPAQEELTVLNAVEFQVGRTGAITPVAKLQPVFVAGVTVSNATL
HNGDEIARLDVAIGDTVIIRRAGDVIPQIIGVLHEKRPANAEKIVFPTECPVCGSVIVRI
EGEAVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGAKLIEQLVDREQIHTPADLFKLD
LNTLARLERMGLKSAQNALDSLQKAKKTTLARFIFALGIREVGEATALNLANHFKTLEAL
KEATLEQLQEVQDVGEVVANRIFVFWREPHNVAVVEDLIAQGIHWETVEVKDVGDNPFKE
KTVVLTGTLTQMGRTEAKALLQQLGAKVSGSVSAKTDLVVAGDSAGSKLTKANELGVKVI
DENTFLAWSKPYL
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgacagacagtattaaattagaaatagaacaattacgccaaacgctacgttatcatgaa
tatcaatatcatgtcttagataatccacaaattcctgatgcggaatacgatcgtttattt
catcgtttaaaaacgctggaacaacaatatccacaatggtttagcccggactctcctaca
caacgagtgggcgcgaaacccctttctgcgtttgcgcaagtgcaacatgaaatgcctatg
ctgtctttggataatgcattttcagatgaagagttgcatgcttttgtcaaacgtattcaa
gaccgtctggttttttcccctaaattacttgaattttgctgcgaaccgaaattagatggg
ttggcggtcagtattttgtatgtagatggaaaattgacacaagcagcgacccgtggtgat
gggagtacaggagaagacattacgttaaatattcgcacagtacgtaatatccctttgcaa
ttgttaatggaaaatccaccgacgcgtttggaagtgcgtggagaagtctttatgtcgcaa
gcgggctttgaggtattaaatgaaaaagcgttagccagaggggagaagacctttgccaat
ccacgtaatgcggcagcgggatcgttgcgtcagttagatccgcgaattactagccaacgt
ccgttgctattaaacgcatatagcattggtgtcgcagaggggattgatttacctgatacc
cattttgaacgcttacaatggttaaaatccattggtattccggtgaataatgagattcag
ttatgtgaagggacggaaaatgtgctcaatttctaccgcgcgattatgcaaaaacggagc
actttgggctatgacattgatgggacagtgattaaagtcaacgatattgctttacaagag
gaattaggttttatttcgaaagcgccacgttgggcaattgcctataaattcccagcacaa
gaagaattgacagtattaaatgcggtggagtttcaagtggggagaaccggtgcaattaca
cccgtcgcgaagttacaacctgtgttcgtcgcaggcgtgacggtcagtaatgcgacactg
cataatggcgatgaaattgcacgtttggatgtggcaattggtgatacggtgattattcgc
cgcgcgggagatgtgattccacaaattattggtgtgctacatgaaaaacgcccagccaat
gcagagaagatcgtttttccgacagaatgtccagtttgcggttcggtgattgtacgtatt
gaaggtgaggccgttgcccgttgtacgggcggtttattctgtgcggcacaacgtaaagaa
gcattgaaacatttcgtctcacgtaaagccatggatattgatggtgttggggcaaaactt
attgaacagttggtggacagagaacaaattcataccccagcggatttatttaaattggat
ctcaacacgttggctcgtttagagcgcatggggcttaaatctgcgcaaaatgccctcgac
agtttacagaaagcgaaaaaaacgactttagcgcgttttatttttgcgctaggtattcgt
gaagtgggcgaggccaccgcactcaacttagccaatcattttaagaccttagaggcatta
aaagaagcgacgctggagcaactacaagaagtgcaagatgtgggcgaagtggtcgctaat
cggatttttgtgttctggcgtgaaccgcataatgtggcagtagtcgaggatctgattgcg
caaggcatccattgggaaaccgtagaagtcaaagatgttggagataacccatttaaagag
aaaacagtggtgttaactggcaccttaacgcaaatggggcggactgaagcgaaagcctta
ctccagcagttaggagcaaaagtcagtggcagtgtttctgccaaaacggatctggtggtg
gcaggtgacagcgcaggttcaaaactgacaaaagccaatgagcttggtgtcaaagtgatt
gatgaaaacaccttcttggcgtggagcaaaccgtacttgtaa
DBGET
integrated database retrieval system
