Pseudomonas mucidolens: NCTC8068_05004
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Entry
NCTC8068_05004 CDS
T08935
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmud
Pseudomonas mucidolens
Pathway
pmud03030
DNA replication
pmud03410
Base excision repair
pmud03420
Nucleotide excision repair
pmud03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC8068_05004 (ligB)
03410 Base excision repair
NCTC8068_05004 (ligB)
03420 Nucleotide excision repair
NCTC8068_05004 (ligB)
03430 Mismatch repair
NCTC8068_05004 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmud03032
]
NCTC8068_05004 (ligB)
03400 DNA repair and recombination proteins [BR:
pmud03400
]
NCTC8068_05004 (ligB)
Enzymes [BR:
pmud01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC8068_05004 (ligB)
DNA replication proteins [BR:
pmud03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC8068_05004 (ligB)
DNA repair and recombination proteins [BR:
pmud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC8068_05004 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC8068_05004 (ligB)
MMR (mismatch excision repair)
DNA ligase
NCTC8068_05004 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC8068_05004 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
HHH_5
Motif
Other DBs
NCBI-ProteinID:
SQH36994
LinkDB
All DBs
Position
1:5406718..5408400
Genome browser
AA seq
560 aa
AA seq
DB search
MMTSRLLIYLLLLLCPTLAWSDECPAWPPAQAKDEITALQRQITLWNDHYHRLGRSLISD
ELYDQARQRLGQWRECFAQETPPADHPLASSRGSLRHPVPHTGLEKLASQSAVEDWIRAR
DGLWVQPKVDGVAVTLIYRAGHLVKAISRGDGVFGQDWSASARKIPGIVQKLPEPIDLLL
QGELYWRLDNHVQGTHGGMNARSRVSGLMNRQHLSDVDAAGIGLFVWAWPQGPADLKEQL
DTLARWGFSDSRRYSQPIGNLEDARNWRVFWHNHPLPFATDGIVLHQNQRAPANRWQASA
PYWSAAWKYPATKALAQVKKVNFNIGRTGRITPILELDPVLLDDRQIRRVSLGSLKHWQE
LDIRPGDQVSISLAGQVIPRFEHVILRSHTRVEVEVPVASDFHPLSCWQLTPGCEEQLLA
RLTWLSSNQGLDLSHIGRETWSTLIQAGQIHGLVDWLNLDEAELANIDGLGDRSSERLLA
SLRSARQRPFAQWLSALGVPPTARNNLEGGWNALTTRDAQAWQTEAGIGPGRAVQLSAFF
HDPQVVAIGETLRAIGIDGF
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgatgacctcgcgactgttgatctatctgctgcttttgctgtgccccaccctcgcctgg
agcgatgaatgcccggcctggccacccgcgcaggccaaggacgaaataacggcgctgcag
cgccagatcaccctctggaatgaccactaccatcggctcggccgctcattgatcagcgac
gagctttacgatcaggcccgccaacgcctgggccaatggcgcgagtgctttgcccaggaa
actccgcccgccgaccatccgctggccagttctcgcgggagcttgcgccatccggtcccg
cacacgggcctggagaaactcgccagtcagtcggcggtggaggactggatccgggcgcgc
gacggcctgtgggtccaacccaaggtcgatggcgtggccgtgaccttgatctaccgggct
ggtcacctggtcaaggccatcagtcgcggcgacggcgtgtttggccaggactggtccgcc
tcggcgcgcaagattccggggattgtgcaaaaactgcccgagcccatcgatctgctgttg
cagggcgagctttattggcgcctggacaatcacgtccagggcacacacggtggcatgaat
gcccgcagtagagtgtccgggctgatgaaccgccagcacctcagcgacgtcgacgccgcc
ggcattggcttgtttgtctgggcctggccccaagggccggcggacctcaaggagcaactc
gacacactggcacgctggggcttcagcgacagtcggcggtatagccaacccatcggcaac
ctcgaggacgcacgtaactggcgcgttttctggcacaaccatccgctgcccttcgccaca
gacggcatcgtgctgcaccagaaccaacgtgcaccggccaaccgttggcaggccagcgcg
ccgtactggtccgccgcctggaagtacccggctaccaaagccctggcgcaggtaaaaaaa
gtgaatttcaacatcggccgcacgggccgtataacgccaatcctggagttggacccggtg
ctgctggacgaccgccagatccggcgagtcagcctcggctccttgaaacactggcaggag
ctggatatccgtcccggtgatcaggtttccatcagcctcgccggtcaagtgatcccaagg
tttgagcacgtcatcctgcgcagccacacacgggtcgaggtcgaggtgccagtggcgagc
gactttcaccctctaagctgctggcaattgaccccgggctgcgaggagcagctacttgcg
cgcttgacctggctgagtagcaatcaggggctggacctctcgcatattggccgcgagacc
tggagcacactgatccaggccggccaaatccatggcttggtcgattggttgaaccttgat
gaggcagagcttgctaacattgacggcctcggtgatcgaagcagtgaacgcctgcttgcc
agtttgcgcagtgcccggcagcgaccgttcgcacaatggttgagtgctctgggtgttccg
cccactgctcgcaataacctggaaggcggctggaatgccttgaccactcgggatgctcaa
gcctggcaaaccgaagcgggaatcggcccgggacgcgcagtacaattgagcgcgtttttc
cacgacccacaggtcgtggccatcggcgaaacattacgtgccattgggatagacggtttc
tag
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