Prevotella multiformis: J4864_01350
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Entry
J4864_01350 CDS
T07481
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pmuf
Prevotella multiformis
Pathway
pmuf03030
DNA replication
pmuf03410
Base excision repair
pmuf03420
Nucleotide excision repair
pmuf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmuf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J4864_01350 (ligA)
03410 Base excision repair
J4864_01350 (ligA)
03420 Nucleotide excision repair
J4864_01350 (ligA)
03430 Mismatch repair
J4864_01350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmuf03032
]
J4864_01350 (ligA)
03400 DNA repair and recombination proteins [BR:
pmuf03400
]
J4864_01350 (ligA)
Enzymes [BR:
pmuf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J4864_01350 (ligA)
DNA replication proteins [BR:
pmuf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J4864_01350 (ligA)
DNA repair and recombination proteins [BR:
pmuf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J4864_01350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J4864_01350 (ligA)
MMR (mismatch excision repair)
DNA ligase
J4864_01350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J4864_01350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
QUB70900
LinkDB
All DBs
Position
1:complement(352141..354195)
Genome browser
AA seq
684 aa
AA seq
DB search
MNKEIQRLVKQLNAASDAYYNGREELMTDYEWDAAFDRLKKLEEQTGIVLPDSPTQNVSA
DNVAGKKEKHEFPALSLAKTKKVEDLARWAEGKPVWLSWKLDGLTLVATYDNGRLTKVVT
RGDGHIGTNITHLSRAIEGILQTIPYRGHLVIRGEAVISYPDFEKFNMESEEAYANPRNL
ASGSLTLKDINEVRQRHLHWIPFTLVYTEGEIGSWGERMAWLERQGFHPVDRELISRPTA
GNIQAVIDSWSSRVTGQALNTRHPAADPQRFPYPVDGLVITYDETAYAATGSVTGHHATR
AGYAFKWQDERAETELDHIEWSCAASTISPVAVFQPVELEGTTVKRASLCNVSECERLGI
GGKGTKIAVIKANKIIPKVVSVVERMGIFHVPETCPVCRSATEVVESEASGTRTLHCTND
HCPAKQLRKFGRFVSKEGVNIDGLSEQTVQKFINLGWIREYADFFHLNEHALQLRTLDGF
GERSVSKLLAAVEKARSVEARRLLFALNIPLVGQDVCNRLLSAYPLKELIRTATESTDDD
VFSTIPGIGPEKSASFVRWMKDAGNQPVLQHLLAELNVRQASSAPTGSSCQELTFVITGD
VHHYKNRNELKAYIESQGGKVTGSVSKSTDFLINNDVESTSGKNQKAKALSIPIISEKEF
IARFAQGSASGLPAQRTEETLFQD
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagaaatacaacgccttgtcaagcagctcaacgctgcctccgatgcttactac
aacggccgtgaagagctcatgaccgactacgagtgggacgctgccttcgaccggctcaag
aagctggaagaacagaccggcatcgtcctccccgactccccgacacagaatgtctcggcc
gacaatgtagccggaaagaaagagaaacatgagtttccggccctgtctctggcaaagacc
aaaaaggtcgaagaccttgccagatgggcagaaggaaagcccgtctggctctcctggaag
ctggacggcctgacgcttgtcgccacttatgacaacggacggctgacaaaagtcgtcacc
cggggcgacgggcacatcggcaccaacatcacccatctttccagagccatcgagggcatc
ttgcagaccatcccctacagaggccatctcgtcatccgcggagaagccgtcatcagctac
cccgacttcgagaagttcaatatggagtcggaggaagcgtatgccaatccccgcaacctc
gcatcaggatcgctcacgctgaaggatatcaacgaggtcaggcaacgccacctgcactgg
attcctttcacccttgtctataccgagggggaaatcggctcatggggcgaacggatggca
tggcttgaacggcagggattccatccggtagacagagaactcatctcacggccgacggcc
gggaacatacaagccgttatcgacagctggtcttcccgtgtcaccggacaagccctcaac
acccggcatccggcagctgacccccaacgcttcccctaccccgtcgacggtctcgtcatc
acttatgacgaaacggcctatgccgcaaccggatcggtcacagggcatcatgccacacgt
gccggctacgccttcaaatggcaggacgagcgggcggaaacggaactggaccacatagaa
tggtcatgtgccgcatctacgatttctccggtcgccgttttccagcctgtcgaactggag
gggacgaccgtcaagcgtgcctcgctctgcaacgtctctgaatgcgaacgcctgggaatc
ggcggcaagggcacgaaaatcgccgtcatcaaggcaaacaaaatcataccgaaggttgtc
agtgtcgttgaacggatgggtatcttccatgtcccggagacctgtccggtgtgccggtcg
gcaacggaagtcgtggagagtgaggccagcgggacacggacactgcactgcacgaacgac
cactgccctgccaaacagctcaggaagttcggccgtttcgtttccaaggagggggtgaac
atcgacggactgtccgaacagactgtccagaagttcatcaacctgggctggatccgcgag
tatgccgacttcttccatctcaacgaacatgctctgcagctgcgtaccttggacggtttc
ggagaaaggagtgtcagcaaactactggcggccgtcgaaaaggcaaggagcgtggaagcc
cgccggctgctcttcgcactcaacattccgctggtcggacaggatgtatgcaaccgtctg
ctttcagcctatccgctgaaagaactcatcaggactgctacggaaagtaccgacgatgat
gtgttttcaaccattcccggtatcggaccggaaaagagtgcaagctttgtccggtggatg
aaagacgcaggcaatcagcctgtgctgcaacacttgctggccgaactcaacgtcaggcaa
gcctcatccgcgccgacaggcagcagctgccaggaactgacattcgtcattacgggcgat
gtccatcattacaagaaccgcaatgagctgaaagcctatatcgaaagccagggcggtaaa
gtcaccggttcggtttccaagtctactgactttctcatcaataatgatgtagaaagcacg
tcgggcaaaaaccagaaagccaaggctctctccatccccatcatctccgaaaaagaattc
atcgcccgttttgcacagggttctgcctccggattacccgcacagaggacagaagaaaca
ttattccaagactga
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integrated database retrieval system
