Prunus mume (Japanese apricot): 103329295
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Entry
103329295 CDS
T03196
Name
(RefSeq) DNA repair protein RAD16
KO
K15083
DNA repair protein RAD16
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103329295
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
103329295
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
DEAD
zf-C3HC4_3
zf-RING_5
zf-C2HC_2
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
103329295
NCBI-ProteinID:
XP_008229965
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Position
LG4:17468485..17474979
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AA seq
877 aa
AA seq
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MELRSRKRVAGPSTDGNEKHQEEEDIIQGTESSDEDTYLPSASSASDSEEGEEHRYNVDL
NDKPSVITPIPKNGKVGRKKVRGEPIYEEKAHKLTQQPVEIDYFGLHKKKKKKSSKDREA
KQRLKWNIWEEEHDKWIDDNVTEDFDLENQNNVISEVSEAPSDLIMPLLRYQKEWLAWAL
KQEESETRGGILADEMGMGKTIQAIALVLARREINWTFNEPGSSTSFPGIKGTLVVCPVV
AVSQWVNEIERFTSKGSTKVLVYHGANREKSSKQFSEYDFVITTYSIVEADYRKNVMPPK
QKCPYCGKLFHEKRLSVHLKYFCGPHAFRTEKQSKQQRKKHLQSIPQKTFEPVKDKKHGG
SRKRSKLHKDDDMDSEDVGQGFSRAKSVLHAVKWNRIILDEAHYIKSRRCNTARAVLALE
SSYKWALSGTPLQNRVGELYSLVRFLQLVPYSYYLCKDCDCITLDHSSSTQCSNCPHNSV
RHFCWWNKYVATPIQLYGNQFRGKRAMLLLKQKILKNIVLRRTKRGRAADLALPPRIVSL
RRDTLDIKEQDYYESLYNDSQALFNTYVNDGTVMNNYAHIFDLLTRLRQSVDHPYLVVYS
ATAALRNEGRVNNDINEQVCGICHEPAEDAVVTACQHAFCKACLIDFSASLGQGSCPTCP
TCSKVLTVDLITNLGAANPTTKTTIKGFRSSSIMNRIQLDNFQTSTKIEALREEIRCMVE
KDGSAKGIVFSQFTAFLDLINYSLQKSGIKCVQLVGSMTMSARDNAIKTFTEDPDCRIFL
MSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFVIENTIEER
ILKLQEKKELVFEGTIGGSSDALGKLTEADLKFLFVT
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atggagcttcgttctcgcaagagagtcgccgggccttctaccgatggaaatgagaaacat
caggaagaggaagatataatccagggcaccgaaagctctgatgaagatacttatttaccg
tctgcgtcttctgcttctgatagcgaagaaggtgaagagcatcgatataatgttgactta
aatgataaaccaagtgttataacccctatacccaaaaatgggaaggtggggcgaaagaag
gtcagaggagaaccaatttacgaagagaaagcacacaaattgactcagcaaccagtcgaa
attgactattttgggttgcacaagaaaaaaaagaaaaagagttctaaagatagggaggca
aagcagcgcttgaagtggaatatctgggaagaggagcatgataaatggattgatgacaat
gtaactgaggattttgatctggaaaatcagaataatgtgataagtgaagtttctgaggca
ccatctgatctaattatgcctttactaaggtaccaaaaggaatggttggcctgggccctc
aaacaagaagagtctgaaaccagaggaggaatcctcgcagatgagatgggaatgggcaag
actatacaagcgattgctcttgtccttgctagacgtgaaattaattggacatttaatgaa
ccaggttcctccacaagctttcctggaatcaaaggcaccctcgtagtctgtcctgtggtt
gccgtgagccaatgggtaaatgagatagagaggtttacttcaaaaggaagcacaaaggtt
ctggtttatcatggggccaatagagagaagagttctaaacagttctcggaatatgatttt
gtcattactacatactccattgttgaggccgattacaggaagaacgtgatgcctcccaaa
cagaaatgcccttattgcggaaagttgtttcatgagaagagactgtccgttcacttgaaa
tatttttgtgggcctcatgcatttagaactgagaagcagtctaagcaacaaaggaaaaag
catctacaatcaataccacagaagacatttgagcctgttaaagacaagaagcatggaggt
tccaggaagagatcaaagctgcacaaggatgatgatatggattcagaagatgttggacaa
ggcttcagcagagcaaagtcggttttgcatgctgtgaagtggaaccgcattattttggat
gaggcgcattatataaaatctaggcgttgtaatactgcaagagctgttcttgccttagag
tcttcatacaaatgggctctaagtggcacaccccttcagaaccgtgttggagaactgtat
tctttggtgcggttcttgcaattagtcccctactcgtattacttgtgcaaagactgtgat
tgcataactcttgatcatagttcctcaacacaatgttcaaattgccctcataattcagtc
agacatttttgttggtggaataaatatgtggcgacgccaatacagttatatggaaatcaa
ttccgaggaaaaagggcgatgctattgctaaaacagaaaattttaaagaacatagtcctg
cgacgaactaaaaggggcagggctgctgatcttgctcttcctcctagaattgtttcattg
aggagggacaccttggatatcaaagaacaagattattacgagtcactatataatgatagt
caggcactatttaacacatatgtcaatgatggaactgtgatgaacaattatgctcacata
tttgatcttctcacacgcttgcggcagtctgttgatcatccttaccttgtggtgtattct
gcaactgctgcactgagaaacgaaggcagggttaataatgatatcaatgagcaagtatgt
ggcatttgtcatgaaccagcagaagatgcagtggttactgcttgtcaacatgccttttgc
aaggcttgcttgattgatttttctgcttctttgggacaaggctcatgccctacatgccct
acatgctcaaaagtacttactgttgatttaattacaaacctaggtgctgctaatccgact
actaaaactaccattaaggggtttagatcctcaagcattatgaacagaattcagcttgac
aactttcagactagtacaaaaattgaggctttgagggaagaaatcagatgcatggttgaa
aaggatggctctgcaaaaggtattgttttcagccagttcacggcattcttggatctcatt
aactactccttgcaaaagtctggtatcaagtgtgtccagttagttggaagcatgacaatg
tccgcaagggataatgctataaagacatttaccgaggatccagattgcaggattttctta
atgagcttgaaggccggaggtgttgctcttaatcttacagttgcatcacatgtatttttg
atggacccgtggtggaacccggctgttgagcagcaagcgcaagatagaatccaccgaata
ggccagtacaaacccatcagaattgtgagatttgtaatcgagaacacaattgaggagagg
attctaaagctacaggagaaaaaggaactagtgttcgagggtactatcggtggttcttca
gatgccctcggaaagctgacggaggctgacttgaaattcctctttgtcacttaa
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