Prunus mume (Japanese apricot): 103344438
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Entry
103344438 CDS
T03196
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103344438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103344438
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103344438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
AAA_25
Arf
AAA
AAA_23
ORC-CDC6-like
AAA_30
nSTAND3
AAA_7
Zeta_toxin
TsaE
AAA_28
Motif
Other DBs
NCBI-GeneID:
103344438
NCBI-ProteinID:
XP_008246253
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Position
LG1:23799421..23800923
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AA seq
322 aa
AA seq
DB search
MGVKLNSGPTIEVNGLKFTYPGINGHPPPGSKPLIEDFNLTLNAGDRCLLVGSNGAGKTT
ILKILGGKHMVEPHMVRVLGRSAFHDTALTGSGDLSYLGGEWRRDVAFAGFDVPIQMDVS
ADKLINGVSGVDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPYKVLLLDEI
TVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPSHIAYVANGKLQLALPMDR
VKEMYKLSLMRTVESWLRKERDEERKRRNERKAKGLPEFEQPNEGSGGDVRAVNNGWAAG
RLNSTIAGEENFVFSSNRVLRQ
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgaagctcaactccggaccaacgatcgaggtcaacggcctcaaattcacctac
ccaggaatcaacggccatcctccaccgggctccaagcctctgatcgaggacttcaacctc
accctcaacgctggcgatcggtgcctcctcgtcggatccaacggcgccggcaaaaccacg
atcttgaagatcttgggaggcaagcacatggtcgagccccacatggttcgcgtgctcgga
aggtcggcgtttcacgacaccgccttgaccggctccggcgacctctcctatctcggcgga
gagtggaggcgagatgtggcttttgcagggtttgatgtcccgatacagatggacgtttcg
gccgataagttgatcaatggggtatcgggggtcgacccacaaaggagagcagagctaata
aaggtcctggatattgatctttcatggaggctgcacaaggtctccgatggtcagagaaga
cgagtacagatctgcatgggcctgctcaagccatacaaggttcttctgcttgatgagata
actgtggaccttgatgtgctagcaagagctgaccttctcaagtttttgagaaaggaatgt
gaagagagaggcgccacaatcatttatgctacacatatatttgatgggttggaggattgg
ccttcacatattgcttatgtagctaatggaaagttgcagctagctctgcctatggataga
gttaaggagatgtacaagttgtcactcatgagaacagttgagagttggctgaggaaggaa
cgtgatgaagagaggaagagaagaaatgagagaaaggcaaagggccttcctgagtttgag
caaccaaatgagggaagtggcggtgatgttcgtgcagtgaataatggctgggcagccgga
cgcttgaattccaccattgctggagaagagaactttgtcttcagctcaaatagagttcta
aggcaatag
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