Protobothrops mucrosquamatus (Taiwan habu): 107294000
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Entry
107294000 CDS
T05763
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pmur
Protobothrops mucrosquamatus (Taiwan habu)
Brite
KEGG Orthology (KO) [BR:
pmur00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pmur03036
]
107294000 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
pmur03400
]
107294000 (SMCHD1)
Chromosome and associated proteins [BR:
pmur03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
107294000 (SMCHD1)
DNA repair and recombination proteins [BR:
pmur03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
107294000 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Ig-CFAP74_3rd
Motif
Other DBs
NCBI-GeneID:
107294000
NCBI-ProteinID:
XP_015678680
LinkDB
All DBs
Position
Unknown
AA seq
2006 aa
AA seq
DB search
MVDEGATWQWRKENTDGTLLSVFVYDRRRDQSNNAAKVLPCQQENYGGFRKAVRQVFDIS
SKETFVITTTARKEITNENFGQIVKDNMTLYLLQRVDQLLTSATKECIEFLPHYDTLVKS
GIYEYYASEGQNPLPFALAELIDNSLSATSQNSGVRCIQLKLFFDDTQGKPAVAVIDNGR
GMTSAQLNNWAIYRLSKFRRQDNIESDHSGYVHTQIVPRSLNSDISYFGVGGKQAVFFVG
QTVRMISKPANSQDVRELILSKEDFEKKERNKEPVYSGYIRNRKLSDFSHIVDDERFLRK
LIMEEKDKESFTAVIITEMKPENIQYLKNNFDSWTRQLTHIYHYYIHGPNGNCTNLPRKK
EKVFNNMVIEISLFEKGKTPQVVNLREIEDDMQTLYINTAADSFEFKARVERDGIVEGII
RYHPFLYEKETYPEDPSRFKDADDEEEESEEEECYTREKGARGKKAIFECFWNGRLIPYT
TVADFEWCALPKKRGLVPVECYNRISGVLFTNDKFEVSTNKLTFTDLELRLKDRSTIFTR
IVNGQEQRMQIDREFTFWLKDCHEKHDKQIKFTQFKGIVIRTDQISKRKQSPWAKYLAIE
WDGNIYKAGHLVRSIKKVPVYHGRIQHFYLYGHHDGDVYATGGDVQIALEPQALYNEIKI
IPICKLDRSVSEAVVKKYIKEEMARFPNSLSITWPEGDELLPNETKCAGFKIGVLKIEIL
NKKGEAMQKLPGPNQGGSKKLLVQLKLILHSPGGNQELFCYISQHGGKWPYWFKKMENIF
KLGTYTLNLQVVLNESNADTYAGIPLPSKTFEFHVKEGKPQKFSIGILDPPFRIGHPFSI
PLDVQDAFGHSTELTEDIVPGLEASGLTLQYEEITRRPNCVIKDIVATGLVNNYQGKNFI
LKITLPGLKEESQVLKIKLLPGLPWQLNVKTDSDVLTLENKTALSLHVEVLDEVGNITAQ
SKLHVQCTFLGVPGLPVYTADCSNTGKNELTGPALHIQNIKKVQILKAKIEIPSCKNVPS
VSKIIKLLPSSYAARLQVYCTEEKKVIQIKNQEEINRVAGDVLKNLTFHMYDEGEREIII
TPALAEKFKISWSPKFNSKQLIKGLLPNVKVPTSVKDESCCLLTFSDEHVSLSTSFVVRP
FADEPKLIKCKIKGSNIIKMGEKLQDEIEVMITDQHGNQIESLTSSCMADLKISGNGLDK
SYLKTFWQQNTQTISVKGIKFEPGRPEVKELHVAWRDFSDYMKLKLIAGPPAKLVLQDWI
EPEKPISIINGKELPKAIIIQLCDQWNNPSAESNIIITLLKHSNIKIIPPDMLHETDTTG
RASFGSLTVHAPKGEYTLQFKASYKKNALSSPVIKINVLPDSEKPECLNITYDENASFTA
GNTFPDFMVSVISEDGNNIKNINPRRICMKIREKNSDDTLSENFATFECTKANNDKDDGF
FCVRNKTVPEKVGKYIIHFVFAIDKTNVLNSKQVIIDVVPNQPVLLKPLTLPNTPAVSNV
QEVDSRTLVKNLTLIVTDKYKNRTGSDLHGKIVAKIESSTEKDIDIPLFQGKKSTVEFCF
HGGIVEIKDLVLAEKSPGRHKTKYKLVFEPVISSSKQYLQPYYLPFMFCNDHESQQQMAI
LTKERDKLSQSIKTYRDCFDIMNQLIAEIKCQIQENEKKELQLKHELKTHQIDIPEANVL
QHIESLIKRKQAEKENISKQPRRICTLAKYPKCNQDILGKISHLAEIEDSEVAKVISWHL
ASDMDCIVTLTTAAARCIFDQTQGAQQVLPLDSIYKKDFLDWNRPLPHERNCFNPIGNPV
FARNLLIFPEHKESCQIVFEMLLGNTIIIDNLDAATHYRKEVVKTTRCPTLLTREGDRIR
NNGKFGGFQNKAPPIEKLRGMVFGAPLPPRCKVIDLHLELLQEYRTAVFRLNKLNTDLKE
QLQSINTSEMQRKKEELADEENKFALIEQKLDMTSSQCSKSSPPSEELDLSEAPSHSKTG
RETKRSYSSEESDSAPPMKKRIGNSN
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atggtggacgagggtgcaacgtggcagtggcggaaggaaaacaccgacggcacactccta
agtgtcttcgtgtacgaccggcgtcgggaccagtcaaataacgccgcaaaagtccttcca
tgtcagcaggaaaactatgggggcttccgtaaggccgtccgccaggtatttgatatttcc
tccaaagaaacttttgttatcacaacaactgctagaaaagaaataacaaatgaaaacttt
ggtcaaattgttaaagacaacatgactctctacttactacagagagttgatcagttgctc
acttcagcaacaaaggagtgcattgagtttttgccacattatgacacacttgtgaaaagt
ggaatatatgaatactatgccagcgaaggccaaaatcctcttccttttgcacttgcagaa
ttgattgataactccttatcagctacttctcaaaattctggagttcggtgcatccaatta
aaactgttctttgatgatactcaaggaaaaccagctgttgctgtgattgataatggaaga
ggcatgacttctgcacaattaaacaattgggctatatatcgactgtcaaagtttagacga
caagacaatatagaaagtgatcattcaggatatgtacatactcaaatagtacctcgcagc
ttaaacagtgatatatcgtattttggagttggtggtaaacaagctgtgttttttgttgga
cagactgttagaatgataagcaaacctgcaaattctcaagatgttcgtgaacttatcctt
tcaaaagaagattttgaaaagaaagaaagaaacaaagaacctgtatatagcggatatata
agaaatagaaagctatctgatttttcccacattgttgatgatgagcgatttctgcgcaag
cttattatggaagagaaagacaaagaaagttttactgccgttattattactgaaatgaag
cctgaaaatatacaataccttaaaaataattttgacagttggacaaggcagttaacacac
atatatcattactatatccatggaccaaacggaaactgcactaatttgccaaggaagaaa
gaaaaagttttcaataatatggttattgagatttcactgtttgaaaaggggaagacacct
caggttgtgaatcttagagaaatcgaggatgatatgcagactttatatataaatacagca
gcagatagttttgagttcaaggctcgtgttgaaagagatggtatagtggaaggaattata
cgttaccatcctttcttatatgagaaagaaacctatcctgaagatccttcaagattcaaa
gatgctgatgatgaagaagaagaaagtgaagaagaggaatgttatacaagagaaaaagga
gccagagggaaaaaagctatttttgaatgtttttggaatggaagattaatcccatataca
actgtagcagattttgaatggtgtgctttgcctaaaaagagagggctcgttccagttgaa
tgctacaacagaatatctggtgtattatttacaaatgacaagtttgaagtcagcacaaac
aaactgactttcacggatttggaattaaggttaaaagatagaagtacaatttttacaaga
attgtcaatggacaggaacagagaatgcaaattgatagagaatttacattttggctcaag
gattgccatgaaaaacacgataaacaaatcaaatttactcagtttaaaggaatagttata
cgtactgatcagatctctaaaagaaaacagagtccttgggctaaatatttggcaattgaa
tgggatggaaatatatataaagctggacatttggtgagatcaattaaaaaagttcctgtg
tatcatggaagaattcaacatttttatctatatggacatcatgatggagatgtctatgct
actggtggagatgttcagatagctttggagcctcaagcattgtacaatgaaataaagatc
attccaatatgcaaacttgatcgttcggtgtcggaagcagtagtgaaaaaatatattaaa
gaagaaatggctcgatttcctaacagtttgtcaataacatggcctgaaggagatgaatta
ttaccaaatgagactaagtgtgcaggatttaaaataggagttctaaaaattgaaatactg
aataaaaaaggcgaggctatgcaaaaacttccaggaccaaatcaaggaggatcaaagaaa
ttacttgtgcaacttaagcttattttgcactctcctggtggaaatcaggaactcttttgt
tatatcagtcaacatggagggaaatggccttactggttcaaaaaaatggaaaatattttt
aagcttggaacctacacgctaaatctgcaagtggtgttgaatgaaagtaatgcagacact
tatgcaggaattcctcttccatctaaaacatttgaatttcatgtaaaagaaggcaaacct
cagaagttttcaataggtattttggatcctccatttcggatagggcatccattcagtatt
cctctagatgtccaggatgcctttggacattccactgaactgacggaagatattgtacca
ggccttgaagcaagtggtctaacattacagtatgaagaaataacaagaagaccaaattgt
gtcattaaagacatagttgctacaggccttgtaaataattaccaaggcaagaattttatt
ctaaagatcactcttcctggtctaaaggaagaatctcaagttttgaaaattaaacttctc
ccaggccttccttggcagctaaatgtaaaaacagattctgatgtcttgacacttgagaat
aaaacagctttatctttgcatgttgaagtattggatgaagtaggcaacataacagcccaa
tcaaaactacatgttcagtgcacgtttttaggagttccaggccttcctgtatatactgca
gattgcagcaatactggcaaaaatgaattaactggaccagctctgcacattcaaaatata
aagaaagttcaaatacttaaagcaaaaattgaaataccaagttgtaaaaatgtgccatca
gtatccaaaattattaaactgcttcctagtagctatgctgcaagactgcaggtttattgc
actgaagaaaaaaaagttattcagattaaaaaccaggaagaaattaaccgcgttgcaggt
gatgtgctaaaaaatcttactttccatatgtatgatgagggagaaagagaaatcataata
actccagctctagctgaaaaatttaaaataagctggagtccaaagtttaatagcaaacaa
ctgatcaaaggattgctacctaatgtgaaagttccaacatctgtaaaagatgaaagctgt
tgtctacttacattcagtgatgagcatgtctctttgtcaacttcatttgtggtcagaccg
tttgctgatgagccaaaacttatcaaatgcaaaattaaaggatcaaatataataaaaatg
ggtgaaaagctgcaagatgaaattgaggtaatgattacagatcagcatggaaatcagatt
gagtccctgacatcatcttgtatggctgacttgaagatttctgggaatggtctggataaa
tcatatttgaaaactttttggcagcaaaatacacaaactatttctgtcaaaggaattaag
tttgaaccaggccgaccagaagttaaagaactacatgttgcttggcgtgatttctccgat
tacatgaagttaaaattgattgctggccctccagctaaattagttcttcaggattggata
gaaccagagaagcctatatctataattaatggcaaagaattaccaaaggctattataatc
cagctctgtgatcagtggaataatccatctgctgaatctaatatcataatcacactttta
aaacatagtaatataaaaattattcctccagatatgctgcatgaaacagacacaactggt
agagcaagctttggaagtcttactgttcatgctcctaagggagaatacactttgcagttc
aaggcttcctataagaagaatgcactgagcagtccagtgatcaagataaatgttttacct
gactcagagaaacctgaatgtttaaatattacatatgatgagaatgctagctttactgct
ggaaacacttttcctgatttcatggttagtgttatttctgaagacggcaacaatattaaa
aatataaatccacgaaggatttgtatgaaaatcagggaaaaaaatagtgatgatacttta
tcagaaaattttgcaacatttgaatgtaccaaagcaaacaatgacaaggatgatggcttt
ttttgcgtcaggaataaaacagttccagaaaaagtgggcaaatacatcatccatttcgta
tttgcaattgacaaaacaaatgttcttaacagtaaacaggttataattgatgtggtgcca
aaccaaccagtactgttgaagccactaactttgccaaatactcctgctgtttctaatgtt
caggaggttgacagtcggacccttgtcaagaacttgactctcattgtaacggataaatac
aaaaaccgtactggaagtgatttacatggaaaaattgtagcaaaaattgaaagttcaact
gagaaagacattgatattcccctgtttcagggtaaaaaaagtacagttgaattttgtttt
cacggaggaattgttgaaattaaggatcttgtgctagcagaaaaaagtccaggaagacat
aaaactaagtataagcttgtatttgagccagttatatcttcttcgaaacaatatttgcaa
ccttattatttaccctttatgttttgtaatgatcatgagagtcaacagcaaatggcaatt
cttacaaaagagagagacaaactttcacagtcaataaaaacatatagagattgttttgac
attatgaatcagcttattgctgaaataaaatgccaaatacaggaaaatgaaaaaaaggag
ttacagctcaaacatgaattgaaaacacatcagattgacatacctgaggccaatgtgctg
cagcatattgaatccttgataaaacgtaagcaggctgagaaggaaaatatatcgaaacaa
cctagaagaatatgcacacttgccaaatatcccaaatgtaatcaggatattttgggcaag
atttcacatttagcagagattgaagacagtgaagtagcaaaggtgatttcctggcatttg
gcaagtgatatggattgtatagtcactttgacaacagctgctgcacgttgtatctttgat
cagactcaaggtgcacaacaagtgttgcctcttgattctatttataagaaggattttcta
gattggaacagacctttacctcatgaaagaaactgtttcaatcctattggaaatcctgta
tttgctaggaacttgctaatatttccagagcacaaggagagttgccaaatagtgtttgag
atgctcttgggtaatacaattattattgacaatttggatgctgccactcattacagaaaa
gaggttgtgaaaacgacgcgttgcccaactttattaacaagagaaggggacagaattcgc
aataatggaaagtttggaggcttccagaataaagcccctcctatagagaagctccggggg
atggtttttggagcacctctgccaccgcgttgcaaggttatcgacctacacctagaactc
cttcaggagtaccgtacagcagttttccgacttaataaattaaacactgaccttaaagaa
caactacaatcaattaatacctcagaaatgcaaagaaagaaagaagagcttgctgacgag
gaaaataaatttgcattaatagagcagaaattagatatgacctcaagtcaatgcagcaaa
tcatcacccccctcagaagagcttgatttgtccgaggctccaagccattcaaaaacagga
agagaaacaaaacgttcatacagttcagaagaatcggattcagctcctcctatgaagaaa
agaataggaaacagcaactaa
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